A method for prediction of environmental conditions based on transcriptome data linked with the environmental gradients. This package provides functions to overview gene-environment relationships, to construct the prediction model, and to predict environmental conditions where the transcriptomes were generated. This package can quest for candidate genes for the model construction even in non-model organisms' transcriptomes without any genetic information.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ggplot2, kernlab |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2022-02-15 |
| DOI: | 10.32614/CRAN.package.QuESTr |
| Author: | Takahiko Koizumi, Kenta Suzuki, Yasunori Ichihashi |
| Maintainer: | Takahiko Koizumi <takahiko.koizumi at riken.jp> |
| License: | MIT + file LICENSE |
| URL: | https://github.com/takakoizumi/QuESTr |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README, NEWS |
| CRAN checks: | QuESTr results |
| Reference manual: | QuESTr.html , QuESTr.pdf |
| Vignettes: |
QuESTr (source, R code) |
| Package source: | QuESTr_0.1.1.tar.gz |
| Windows binaries: | r-devel: QuESTr_0.1.1.zip, r-release: QuESTr_0.1.1.zip, r-oldrel: QuESTr_0.1.1.zip |
| macOS binaries: | r-release (arm64): QuESTr_0.1.1.tgz, r-oldrel (arm64): QuESTr_0.1.1.tgz, r-release (x86_64): QuESTr_0.1.1.tgz, r-oldrel (x86_64): QuESTr_0.1.1.tgz |
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