PACVr: Plastome Assembly Coverage Visualization
Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
| Version: |
1.0.11 |
| Depends: |
R (≥ 3.3.0) |
| Imports: |
Biostrings (≥ 2.48.0), dplyr, GenomicAlignments (≥ 1.18.1), GenomicRanges, IRanges, logger, read.gb (≥ 2.2), RCircos (≥
1.2.0), grDevices, stats, utils, tidyr, R6 |
| Suggests: |
testthat (≥ 3.0.0), rentrez |
| Published: |
2024-04-10 |
| DOI: |
10.32614/CRAN.package.PACVr |
| Author: |
Gregory Smith [ctb],
Nils Jenke [ctb],
Michael Gruenstaeudl
 [aut, cre] |
| Maintainer: |
Michael Gruenstaeudl <m_gruenstaeudl at fhsu.edu> |
| BugReports: |
https://github.com/michaelgruenstaeudl/PACVr/issues |
| License: |
BSD 3-clause License + file LICENSE |
| URL: |
https://github.com/michaelgruenstaeudl/PACVr |
| NeedsCompilation: |
no |
| Citation: |
PACVr citation info |
| CRAN checks: |
PACVr results [issues need fixing before 2026-03-30] |
Documentation:
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