A graphical user interface tool to estimate ploidy from DNA cells stained with fluorescent dyes and analyzed by flow cytometry, following the methodology of Gómez-Muñoz and Fischer (2024) <doi:10.1101/2024.01.24.577056>. Features include multiple file uploading and configuration, peak fluorescence intensity detection, histogram visualizations, peak error curation, ploidy and genome size calculations, and easy results export.
| Version: | 0.1.1 |
| Imports: | BiocManager, dplyr, DT, ggplot2, ggrepel, gridExtra, markdown, shiny, shinythemes, tidyr, zoo |
| Suggests: | knitr, flowCore, rmarkdown |
| Published: | 2025-01-15 |
| DOI: | 10.32614/CRAN.package.MuPETFlow |
| Author: | Cintia Gómez-Muñoz
|
| Maintainer: | Cintia Gómez-Muñoz <cintia.gomez_munoz at sorbonne-universite.fr> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MuPETFlow results |
| Reference manual: | MuPETFlow.html , MuPETFlow.pdf |
| Vignettes: |
MuPETFlow-introduction (source, R code) |
| Package source: | MuPETFlow_0.1.1.tar.gz |
| Windows binaries: | r-devel: MuPETFlow_0.1.1.zip, r-release: MuPETFlow_0.1.1.zip, r-oldrel: MuPETFlow_0.1.1.zip |
| macOS binaries: | r-release (arm64): MuPETFlow_0.1.1.tgz, r-oldrel (arm64): MuPETFlow_0.1.1.tgz, r-release (x86_64): MuPETFlow_0.1.1.tgz, r-oldrel (x86_64): MuPETFlow_0.1.1.tgz |
| Old sources: | MuPETFlow archive |
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