MuPETFlow: Multiple Ploidy Estimation Tool for all Species Compatible with Flow Cytometry

A graphical user interface tool to estimate ploidy from DNA cells stained with fluorescent dyes and analyzed by flow cytometry, following the methodology of Gómez-Muñoz and Fischer (2024) <doi:10.1101/2024.01.24.577056>. Features include multiple file uploading and configuration, peak fluorescence intensity detection, histogram visualizations, peak error curation, ploidy and genome size calculations, and easy results export.

Version: 0.1.1
Imports: BiocManager, dplyr, DT, ggplot2, ggrepel, gridExtra, markdown, shiny, shinythemes, tidyr, zoo
Suggests: knitr, flowCore, rmarkdown
Published: 2025-01-15
DOI: 10.32614/CRAN.package.MuPETFlow
Author: Cintia Gómez-Muñoz ORCID iD [aut, cre], Gilles Fischer ORCID iD [aut]
Maintainer: Cintia Gómez-Muñoz <cintia.gomez_munoz at sorbonne-universite.fr>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: README
CRAN checks: MuPETFlow results

Documentation:

Reference manual: MuPETFlow.html , MuPETFlow.pdf
Vignettes: MuPETFlow-introduction (source, R code)

Downloads:

Package source: MuPETFlow_0.1.1.tar.gz
Windows binaries: r-devel: MuPETFlow_0.1.1.zip, r-release: MuPETFlow_0.1.1.zip, r-oldrel: MuPETFlow_0.1.1.zip
macOS binaries: r-release (arm64): MuPETFlow_0.1.1.tgz, r-oldrel (arm64): MuPETFlow_0.1.1.tgz, r-release (x86_64): MuPETFlow_0.1.1.tgz, r-oldrel (x86_64): MuPETFlow_0.1.1.tgz
Old sources: MuPETFlow archive

Linking:

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