plot_continuous_var() has new arguments
alphaCI (sets credible interval width) and
exclude_sources_below, which allows you to remove sources
from the plot whose median proportion is below a specified level for all
values of the continuous variable (i.e. only plot sources with median
contributions above 5%).
BUG FIX
Fixed two bugs in plot_continuous_var() #198 and
#212
MixSIAR 3.1.11
MAJOR CHANGE
For MixSIAR to remain on CRAN, had to remove the
mixsiar_gui() function. mixsiar_gui() is now
found in the new GitHub-only package MixSIARgui.
devtools::install_github("brianstock/MixSIARgui", dependencies=T) # installs MixSIAR as dependency
library(MixSIARgui) # also loads MixSIAR
mixsiar_gui()
MINOR IMPROVEMENTS
Allow output_JAGS() to suppress diagnostic pdf plots
with output_options$diag_save_ggmcmc = FALSE
Allow plot_data() to return the ggplot object so that
it can be modified by the user
2 tweaks to make it clearer which sources receive which weights when
using an informative prior
source names appear in plots from plot_prior()
function
warning message that asks users to confirm the informative prior
matches their alpha vector
Update/fix alligator ex
moved calc_eps()
add code to plot cont effect + random effects of individuals
(mixsiar_script_alligator_length_ind.R)
BUG FIX
Fix error when combining sources with > 9 sources
MixSIAR 3.1.10
MINOR IMPROVEMENTS
fixed minor mistakes in manual (new example datasets table)
scale mix and source tracer data (so can always use same priors
regardless of scale of data)
update compare_models to work with loo 2.0.0
MixSIAR 3.1.9
Nothing changed, just trying to get new Zenodo DOI (3.1.8 failed)
MixSIAR 3.1.8
MINOR IMPROVEMENTS
updated manual
new example: alligator diet, model comparison table with LOO/WAIC
weights
new example: mantis shrimp diet, informative priors + combining
sources
new function ‘compare_models’ to perform model selection based on
LOO/WAIC weights, via ‘loo’ package
new function ‘combine_sources’ to aggregate sources a
posteriori
new function ‘summary_stat’ to print summary of posterior after
combining sources
new function ‘plot_intervals’ to plot CI of posterior after
combining sources
MixSIAR 3.1.7.9001
MINOR IMPROVEMENTS
Removed attach.jags call (now directly use
jags.1$BUGSoutput$sims.list)