MicrobTiSDA: Microbiome Time-Series Data Analysis
Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5) |
| Imports: | caret, cluster, dplyr, ggdendro, ggplot2, ggraph, MASS, mgcv, plyr, pracma, randomForest, reshape2, scales, splines, stats, tibble, tidygraph, tidyr, vegan, visNetwork |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-09-22 |
| DOI: | 10.32614/CRAN.package.MicrobTiSDA |
| Author: | Shijia Li  [aut,
cre] |
| Maintainer: | Shijia Li <s.li2 at uva.nl> |
| BugReports: | https://github.com/Lishijiagg/MicrobTiSDA/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/Lishijiagg/MicrobTiSDA |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MicrobTiSDA results |
Documentation:
| Reference manual: | MicrobTiSDA.html , MicrobTiSDA.pdf |
| Vignettes: |
MicrobTiSDA (source, R code) |
Downloads:
| Package source: | MicrobTiSDA_0.1.0.tar.gz |
| Windows binaries: | r-devel: MicrobTiSDA_0.1.0.zip, r-release: MicrobTiSDA_0.1.0.zip, r-oldrel: MicrobTiSDA_0.1.0.zip |
| macOS binaries: | r-release (arm64): MicrobTiSDA_0.1.0.tgz, r-oldrel (arm64): MicrobTiSDA_0.1.0.tgz, r-release (x86_64): MicrobTiSDA_0.1.0.tgz, r-oldrel (x86_64): MicrobTiSDA_0.1.0.tgz |
Linking:
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