Performs multivariate meta-analysis for high-dimensional data to integrate and collectively analyse individual-level data from multiple studies, as well as to combine summary estimates. This approach accounts for correlation between outcomes, incorporates within- and between-study variability, handles missing values, and uses shrinkage estimation to accommodate high dimensionality. The 'MetaHD' R package provides access to our multivariate meta-analysis approach, along with a comprehensive suite of existing meta-analysis methods, including fixed-effects and random-effects models, Fisher's method, Stouffer's method, the weighted Z method, Lancaster's method, the weighted Fisher's method, and vote-counting approach. Visualisation tools are provided for interpreting and comparing results across methods, including Venn diagrams, UpSet plots, and ROC curves, heatmaps of pooled effect sizes and correlations among outcomes. A detailed vignette with example datasets and code for data preparation and analysis is available at <https://alyshadelivera.github.io/MetaHD_vignette/>.
| Version: | 0.1.6 |
| Depends: | R (≥ 4.4.0) |
| Imports: | dplyr, tidyr, metafor, corpcor, nloptr, Matrix, matrixcalc, Rcpp (≥ 1.0.0), dynamicTreeCut, cluster, future.apply, metapro, metap, UpSetR, pROC, graphics, grDevices, tools, ComplexHeatmap, circlize |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | gVenn, testthat (≥ 3.0.0) |
| Published: | 2026-07-09 |
| DOI: | 10.32614/CRAN.package.MetaHD |
| Author: | Jayamini Liyanage [aut, cre], Alysha De Livera [aut], Luke Prendergast [aut] |
| Maintainer: | Jayamini Liyanage <j.liyanage at latrobe.edu.au> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| In views: | MetaAnalysis |
| CRAN checks: | MetaHD results |
| Reference manual: | MetaHD.html , MetaHD.pdf |
| Package source: | MetaHD_0.1.6.tar.gz |
| Windows binaries: | r-devel: MetaHD_0.1.6.zip, r-release: MetaHD_0.1.6.zip, r-oldrel: MetaHD_0.1.6.zip |
| macOS binaries: | r-release (arm64): MetaHD_0.1.6.tgz, r-oldrel (arm64): MetaHD_0.1.6.tgz, r-release (x86_64): MetaHD_0.1.6.tgz, r-oldrel (x86_64): MetaHD_0.1.6.tgz |
| Old sources: | MetaHD archive |
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