Provides tools for extracting segment paths from Graphical Fragment Assembly ('GFA') and Graph Alignment Format ('GAF') files. parse_paths_gfa() reads P (path) and W (walk) records and returns a named list of segment identifiers for each accession. parse_paths_gaf() parses the path string from each alignment and returns a named list of segments traversed by each query. parse_segment_lengths_gfa() reads S records and returns a named list of segment lengths keyed by segment identifier. These tools are intended to simplify downstream interpretation and analysis of pangenome graphs.
| Version: | 0.1.2 |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2026-09-12 |
| DOI: | 10.32614/CRAN.package.MatchAlign (may not be active yet) |
| Author: | Camille R. Mazurek [aut, cre], Michael J. Tisza [ctb] |
| Maintainer: | Camille R. Mazurek <camillemazurek23 at gmail.com> |
| BugReports: | https://github.com/cromazurek/MatchAlign/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/cromazurek/MatchAlign |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | MatchAlign results |
| Reference manual: | MatchAlign.html , MatchAlign.pdf |
| Package source: | MatchAlign_0.1.2.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): MatchAlign_0.1.2.tgz, r-release (x86_64): MatchAlign_0.1.2.tgz, r-oldrel (x86_64): MatchAlign_0.1.2.tgz |
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