MKomics: Omics Data Analysis

Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007> ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).

Version:	0.7
Depends:	R (≥ 3.5.0)
Imports:	stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma, grid, circlize, ComplexHeatmap
Suggests:	knitr, rmarkdown
Published:	2021-08-08
DOI:	10.32614/CRAN.package.MKomics
Author:	Matthias Kohl [aut, cre]
Maintainer:	Matthias Kohl <Matthias.Kohl at stamats.de>
License:	LGPL-3
URL:	https://www.stamats.de/
NeedsCompilation:	no
Citation:	MKomics citation info
Materials:	NEWS
CRAN checks:	MKomics results

Documentation:

Reference manual:	MKomics.html , MKomics.pdf
Vignettes:	MKomics (source, R code)

Downloads:

Package source:	MKomics_0.7.tar.gz
Windows binaries:	r-devel: MKomics_0.7.zip, r-release: MKomics_0.7.zip, r-oldrel: MKomics_0.7.zip
macOS binaries:	r-release (arm64): MKomics_0.7.tgz, r-oldrel (arm64): MKomics_0.7.tgz, r-release (x86_64): MKomics_0.7.tgz, r-oldrel (x86_64): MKomics_0.7.tgz
Old sources:	MKomics archive

Reverse dependencies:

Reverse suggests:

RFLPtools

Linking:

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