retrieveOutput()calcQuantiles()plotMGDrivESingle()parameterizeMGDrivE() takes several new parameters
sampTime indicates how often output is written from the
simulationinheritanceCube is now required to parameterize the
initial genotype distributionsLarPopRatio, AdPopRatio_F, and
AdPopRatio_M have been updated internally to reflect
accurate default behavior and handle different user input to set
them.splitOutput()aggregateFemales()calcQuantiles()splitOutput() and aggregateFemales() have
been fixed to properly use the writeDir parameter.verbose options have been updated for consistency.
The default is TRUE.parameterizeMGDrivE() had internal loops replaced with
vectorized functions.oneDay_mating_deterministic_Patch() and
oneDay_mating_stochastic_Patch(). They properly account for
zero probabilities with males and the associated female deaths.
eta() was turned into
a matrix object, allowing selective mating.omega() is supposed to be a matrix, and change for each
node. That isn’t implemented here, and I don’t know why not.calcOmega() has been updated internally.
stats::uniroot() dependency is removed.mu.cubeClvR2() - Thank you
Dr. Leftwich.pkgdown.
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