Common coordinate-based workflows involving processed chromatin loop and genomic element data are considered and packaged into appropriate customizable functions. Includes methods for linking element sets via chromatin loops and creating consensus loop datasets.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.4.0) |
| Imports: | GenomicRanges, IRanges, utils, S4Vectors |
| Suggests: | testthat, knitr, rmarkdown, covr |
| Published: | 2019-12-20 |
| DOI: | 10.32614/CRAN.package.LoopRig |
| Author: | Hassaan Maan [aut, cre] |
| Maintainer: | Hassaan Maan <hurmaan99 at gmail.com> |
| License: | GPL-3 | file LICENSE |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | LoopRig results |
| Reference manual: | LoopRig.html , LoopRig.pdf |
| Vignettes: |
LoopRig-Tutorial (source, R code) |
| Package source: | LoopRig_0.1.1.tar.gz |
| Windows binaries: | r-devel: LoopRig_0.1.1.zip, r-release: LoopRig_0.1.1.zip, r-oldrel: LoopRig_0.1.1.zip |
| macOS binaries: | r-release (arm64): LoopRig_0.1.1.tgz, r-oldrel (arm64): LoopRig_0.1.1.tgz, r-release (x86_64): LoopRig_0.1.1.tgz, r-oldrel (x86_64): LoopRig_0.1.1.tgz |
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