LakeMetabolizer: Tools for the Analysis of Ecosystem Metabolism
A collection of tools for the calculation of freewater metabolism
from in situ time series of dissolved oxygen, water temperature, and,
optionally, additional environmental variables. LakeMetabolizer implements
5 different metabolism models with diverse statistical underpinnings:
bookkeeping, ordinary least squares, maximum likelihood, Kalman filter,
and Bayesian. Each of these 5 metabolism models can be combined with
1 of 7 models for computing the coefficient of gas exchange across the
air–water interface (k). LakeMetabolizer also features a variety of
supporting functions that compute conversions and implement calculations
commonly applied to raw data prior to estimating metabolism (e.g., oxygen
saturation and optical conversion models).
| Version: |
1.5.6 |
| Depends: |
R (≥ 2.15.0), rLakeAnalyzer (≥ 1.4) |
| Imports: |
plyr, methods |
| Suggests: |
R2jags, testthat |
| Published: |
2025-10-30 |
| DOI: |
10.32614/CRAN.package.LakeMetabolizer |
| Author: |
Luke Winslow [aut],
Jacob Zwart  [cre,
aut],
Ryan Batt [aut],
Jessica Corman [aut],
Hilary Dugan [aut],
Paul Hanson [aut],
Aline Jaimes [aut],
Jordan Read [aut],
Richard Woolway [aut] |
| Maintainer: |
Jacob Zwart <jayzlimno at gmail.com> |
| BugReports: |
https://github.com/GLEON/LakeMetabolizer/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://www.tandfonline.com/doi/abs/10.1080/IW-6.4.883 |
| NeedsCompilation: |
yes |
| Citation: |
LakeMetabolizer citation info |
| Materials: |
NEWS |
| CRAN checks: |
LakeMetabolizer results |
Documentation:
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