LBDiscover: Literature-Based Discovery Tools for Biomedical Research
A suite of tools for literature-based discovery in biomedical research.
Provides functions for retrieving scientific articles from 'PubMed' and
other NCBI databases, extracting biomedical entities (diseases, drugs, genes, etc.),
building co-occurrence networks, and applying various discovery models
including 'ABC', 'AnC', 'LSI', and 'BITOLA'. The package also includes
visualization tools for exploring discovered connections.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
httr (≥ 1.4.0), xml2 (≥ 1.3.0), igraph (≥ 1.2.0), Matrix (≥ 1.3.0), utils, stats, grDevices, graphics, tools, rentrez (≥ 1.2.0), jsonlite (≥ 1.7.0) |
| Suggests: |
openxlsx (≥ 4.2.0), SnowballC (≥ 0.7.0), visNetwork (≥
2.1.0), spacyr (≥ 1.2.0), parallel, digest (≥ 0.6.0), irlba (≥ 2.3.0), knitr, rmarkdown, base64enc, reticulate, testthat (≥ 3.0.0), mockery, covr, htmltools, data.table, tibble |
| Published: |
2025-06-16 |
| DOI: |
10.32614/CRAN.package.LBDiscover |
| Author: |
Chao Liu  [aut,
cre] |
| Maintainer: |
Chao Liu <chaoliu at cedarville.edu> |
| BugReports: |
https://github.com/chaoliu-cl/LBDiscover/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/chaoliu-cl/LBDiscover,
https://liu-chao.site/LBDiscover/ |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
LBDiscover results |
Documentation:
Downloads:
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