Provides functions for SNP-phased allele-specific methylation (ASM) analysis across the 41 canonical human imprinted differentially methylated regions (DMRs). Reads are assigned to REF or ALT alleles based on bisulfite-aware SNP detection, enabling diagnosis of imprinting disorders from whole-genome bisulfite sequencing data. <https://github.com/19-saha/ImprintCapASM>.
| Version: | 0.1.1 |
| Imports: | data.table, readxl, writexl, vcfR, ggplot2, Rsamtools, tools |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: | 2026-06-30 |
| DOI: | 10.32614/CRAN.package.ImprintCapASM (may not be active yet) |
| Author: | Subham Saha [aut, cre, cph], Francesco Cecere [aut], Frederic Brioude [aut, fnd] |
| Maintainer: | Subham Saha <saha_19 at outlook.com> |
| BugReports: | https://github.com/19-saha/ImprintCapASM/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/19-saha/ImprintCapASM |
| NeedsCompilation: | no |
| SystemRequirements: | samtools (>= 1.10) |
| Materials: | README |
| CRAN checks: | ImprintCapASM results |
| Reference manual: | ImprintCapASM.html , ImprintCapASM.pdf |
| Vignettes: |
ImprintCapASM-workflow (source, R code) |
| Package source: | ImprintCapASM_0.1.1.tar.gz |
| Windows binaries: | r-devel: ImprintCapASM_0.1.1.zip, r-release: not available, r-oldrel: ImprintCapASM_0.1.1.zip |
| macOS binaries: | r-release (arm64): ImprintCapASM_0.1.1.tgz, r-oldrel (arm64): ImprintCapASM_0.1.1.tgz, r-release (x86_64): ImprintCapASM_0.1.1.tgz, r-oldrel (x86_64): ImprintCapASM_0.1.1.tgz |
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