Add ScaleFloodData() function to scale recession coefficients
Add ReadFloodData() and WriteFloodData() functions
Update CompareFiles() function to warn if “type” argument is not in
the supported list of options
Update links to HYPEtools Wiki
HYPEtools 1.6.1 (2024-01-12)
Enhancements and bug fixes
Highlights
Add cbind option for adding groups in
PlotPerformanceByAttribute()
Handle NA values when scaling axes in
PlotPerformanceByAttribute()
Handle group IDs as strings in PlotPerformanceByAttribute()
Add argument to adjust spacing between plots and summary table in
PlotPerformanceByAttribute()
Add warning for non-standard column names when using
ReadGeoData()
Update default info columns for VariableLookup functions
Add jitter to points with duplicate geometries in
PlotMapPoints()
Hide label group by default for Leaflet maps in
MapRegionalSources()
Allow SUBIDs with many digits in SortGeoData()
Update PlotSimObsRegime() to ignore NA values and to fix percentile
polygons when using log scale with negative/zero values (Issue #61)
Create distinctColorPalette() function and update
PlotSubbasinRouting() and MapRegionalSources() to allow setting a seed
so palettes can be reproduced
Update MapRegionalSources() to allow specifying different connection
groups with different colors
Various updates to help text
HYPEtools 1.6.0 (2023-10-18)
Enhancements
Highlights
Remove hydroGOF and hydroTSM dependencies because packages are being
archived by CRAN due to not updating to remove dependencies on retired
r-spatial packages
Various updates to help text
HYPEtools 1.5.2 (2023-10-06)
Enhancements and bug fixes
Highlights
Fix ReadObs() so date/time format works when importing as a
data.table object
Prevent scientific notation when writing files
Add ReadClassData() function
Add argument to control date/time format for x-axis in
PlotBasinOutput()
HYPEtools 1.5.1 (2023-08-24)
Enhancements and bug fixes
Highlights
Fix broken @docTYPE package documentation
(package?pkgname) as described here:
https://github.com/r-lib/roxygen2/issues/1491
Update PlotMapOutput() and PlotMapPoints() to allow for missing
SUBIDs in MapOutput or GIS files
Update PlotMapOutput() and PlotMapPoints() functions so
“map”/“sites” and “map.subid.column”/“sites.subid.column” arguments are
interchangeable
HYPEtools 1.5.0 (2023-08-14)
Enhancements and bug fixes
Highlights
Add basic MergeObs() function
Allow users to change polygon outline colors in in
PlotMapOutput()
Fix bug in PlotMapOutput() that ignored user defined col.breaks
Allow users to specify custom labels for PlotMapPoint() legends
Remove ggspatial dependency because the package is set to be
archived by CRAN due to unaddressed check problems
HYPEtools 1.4.1 (2023-06-30)
Enhancements and bug fixes
Highlights
Add option in SubidAttributeSummary() to summarize landuse, soil,
and crop fractions for just subbasin areas (not upstream areas)
Add PartyParrot() Easter Egg
Fix example for PlotSubbasinRouting() which was not working
HYPEtools 1.4.0 (2023-05-17)
New functions and bug fixes
Highlights
Fix bug in checking of PlotMapPoints() and PlotMapOutput() legend
positions
Fix bug in PlotMapPoints() where custom color breaks were
ignored
Add option to reverse color palette in PlotMapPoints()
Add pseudo-log scale to PlotPerformanceByAttribute() if any zero or
negative values exist
Add options for boxplot density plots and common y-axis in
PlotPerformanceByAttribute()
Allow for specifying only number of rows or columns in
PlotPerformanceByAttribute()
Add “-9999” as NA string in ReadSubass()
Fix bug in PlotBasinOutput() where line plots would not get
generated if NA values were present
Update plotting functions to replace usage of deprecated ggplot2
aes_string() function
HYPEtools 1.3.0 (2023-04-05)
New functions and bug fixes
Highlights
Fix bug in PlotMapPoints() and PlotMapOutput() that would prevent
plots from being generated if “x” was e.g. a tibble
Fix bug in PlotMapPoints() that would prevent plots from being
generated with user defined color scale if NA values were present
Update warning text in WriteObs()
Add VisualizeMapOutput() and VisualizeMapPoints() Shiny apps
Add ScalePar() to scale par files to different model time steps
Add comparison threshold for numeric values in CompareFiles()
HYPEtools 1.2.0 (2023-02-10)
New functions and bug fixes
Highlights
Added “exact” mode to ReadInfo() to read info.txt files with exact
info.txt file structure
Added AddInfoLine(), RemoveInfoLine(), and WriteInfo() functions to
help with info.txt file manipulation
Added AllSimToPar() and BestSimsToPar() functions to update a
par.txt file with parameter values from an allsim.txt or bestsims.txt
file
Updated CompareFiles() to include options for Simass and Subass
files and to use ReadObs() instead of ReadPTQobs()
Add error message to CompareFiles() to handle if compare.order =
FALSE and by = NULL.
Update ReadSubass() to be able to read Subass files with zero rows
and add na.strings argument.
Updated PlotMapOutput() and PlotMapPoints() to generate ggplot maps
by default
Updated WriteXobs() to include !! at beginning of comment line
Added CITATION.cff file
Updated WriteObs() to allow for appending data to existing file
Fix bugs in ignore.cols for WriteHarmonizedData() and
WriteHarmonizedSpatialDescription() to allow for lower case values and
to format dates with times correctly
Update GroupSLCClasses() to allow for multiple values for type
argument
Added WriteGlacierData()
HYPEtools 1.1.0 (2022-10-26)
New functions and bug fixes
Highlights
Fixed bug in PlotMapPoints() that prevented plot from displaying for
default plots with geographic coordinate systems
Added ability to toggle on/off display of point groups in
PlotMapPoints() Leaflet maps
Fixed TS plots in PlotBasinSummary() to use simulated discharge
(cout) with reTS instead of using observed discharge (rout)
Added SubidAttributeSummary() and PlotPerformanceByAttribute()
functions to plot model performance by subbasin attributes
Added WriteHarmonizedData() and WriteHarmonizedSpatialDescription()
functions to help with HYPEObsMetadataTools workflow.
IsHeadwater: Quickly query vectors of HYPE SUBIDs to identify if
they are headwater subbasins
IsOutlet: Quickly query vectors of HYPE SUBIDs to identify if they
are outlet subbasins
ReadInfo: Import a HYPE model settings information file as list into
R
ReadUpdate: Import HYPE “update.txt” files as data frames into
R
HYPEtools 0.5.1 (2021-08-27)
New functions and bug fixes
Highlights
Further leaflet plotting functionality, with PlotMapPoints
Various improvements and bug fixes in existing functions
Notable Shortcomings
SortGeoData sorting with branches not yet fixed.
New Functions
ReadObs: Replaces ReadPTQObs and now supports more HYPE input data
types
CompareFiles: Compare imported HYPE files for differences, typically
used in quality control
PlotSubbasinRouting: Plot routing of subbasins for a HYPE model on
an interactive map
VariableInfo and VariableSearch: Lookup information (e.g. Name,
Units) for a specific HYPE variable ID, or find HYPE variable
information for a search term.
HYPEtools 0.5.0 (2021-05-13)
New functions and bug fixes
Highlights
PlotMapOutput now offers plotting to Leaflet maps
Rudimentary netCDF file support in ReadTimeOutput (to be extended in
coming releases)
Targeted summary method for GeoData.txt files
New S3 class for HypeGeoData with summary and merge methods
RescaleSLCClasses: Rescale SLC classes in a GeoData data frame
HYPEtools 0.4.6 (2019-09-02)
Bug fixes and improvements
Highlights
PlotBasinOutput and PlotBasinSummary now with default printing to
pdf file, and new argument ‘driver’
PlotMapOutput now with argument ‘col’ instead of ‘col.ramp.fun’,
accepts vectors of colors in addition to color ramp functions
Numerous bug fixes and small improvements
HYPEtools 0.4.5 (2018-02-20)
Bug fixes and improvements
Highlights
Bug fixes in ReadMapOutput, WriteMapOutput, ReadTimeOutput,
PlotMapOutput, PlotMapPoints, AnnualRegime
Export functions updated to data.table’s fwrite
Better performance of AnnualRegime
New Functions
ExtractStats: Calculate aggregated statistics from long-term time
series, typically imported HYPE time output files
HYPEtools 0.4.4 (2017-08-31)
New functions and bug fixes
Highlights
Bug fixes
New Functions
WriteMapOutput: Export a HYPE map output file
HYPEtools 0.4.3 (2016-11-10)
New functions and bug fixes
Highlights
Bug fixes, among them a critical one in PlotBasinSummary(), where
upstream loads were partly wrong
Optimised classes are no longer included as elements in optpar
lists, but can now be inspected using OptimisedClasses()
New Functions
CreateOptpar: Create a list representing a HYPE optpar.txt file from
an imported par.txt file and a selection of parameters
GwRetention: Calculate nutrient load retention fractions in
groundwater parts of HYPE, i.e. after rootzone retention
OptimisedClasses: Check which classes (land use or soil) of
parameters in an imported optpar list are actually optimized, i.e. have
a min/max range larger than zero
ReadForcKey: Import HYPE ForcKey files
WriteForcKey: Write HYPE ForcKey files
WriteOptpar: Write a HYPE parameter optimization list to a file
HYPEtools 0.4.2 (2016-10-05)
Bug fixes
Highlights
Div. improvements to PlotBasinSummary()
Div. bug fixes
ReadDescription() updated, not backwards-compatible
HYPEtools 0.4.1 (2016-09-02)
New functions and bug fixes
Highlights
Bug fixes and improvements in various functions, changes to
ReadDescription() are not backwards-compatible
New Functions
BarplotUpstreamClasses: Plot upstream-averaged landscape property
classes of one or several sub-basins as bar plots, e.g. land use or
soils
PlotSimObsRegime: Combined plot for annual regimes with box plot
elements for observed variables and ribbon elements for simulated
variables
PlotBasinSummary: Plot a standard suite of plots summarizing
properties of a sub-basin including upstream area and model performance
for discharge and concentrations of nutrients, sediment, and
tracers
CustomColors: Custom color ramp functions
HYPEtools 0.4.0 (2016-06-12)
New functions and bug fixes
Highlights
Much-improved import of large files, thanks to fread() from package
data.table
ReadPTQobs(), ReadXobs(), ReadGeoData() updated
Option to import as data.table object to make use of the speedier
data handling for that class
New S3 classes HypeMultiVar and HypeXobs, improvements to
HypeSingleVar
Attribute preservation when sub-setting
PBIAS(), Pearson’s R (r()), and summary() methods for
HypeSingleVar
New map plot function PlotMapPoints(), mostly for quickly plotting
performance measures at measurement points on a map
New import function for text files with HYPE land use, soil, and
crop class descriptions, for easier label plotting: ReadDescription()
(the imported file is not a HYPE file, file structure described in
ReadDescription help entry)
New import function for optpar.txt files, imports optpar contents
into a list structure which makes it easier to create and update optpar
files
New trivial import/export functions for HYPE files: ReadAllsim(),
ReadDamData(), ReadGlacierData(), ReadSubass(), WriteCropData(),
WriteDamData(), WriteMgmtData(), WritePointSourceData()
Numerous bug fixes since last release
HYPEtools 0.3.9 (2016-02-10)
Bug fixes
HYPEtools 0.3.8 (2015-11-06)
New functions and bug fixes
Highlights
Bug fixes in PlotBasinOutput() after testing the initial 0.3-7
release version
New function ReadWsOutput() to import MC results
First HYPE-specific S3 class HypeSingleVar, for (multiple) time and
map output files, relates to the new import function
New sub-setting and NSE calculation (for hydroGOF::NSE generic)
methods for the new class
Several other bug fixes and internal updates
HYPEtools 0.3.7 (2015-10-20)
New functions and bug fixes
New Functions
PlotBasinOutput: Plot a standard suite of time series plots from a
basin output file, typically used for model performance inspection
and/or during manual calibration
PlotAnnualRegime: Convenience wrapper function for a combined line
plot with polygon variation ranges
UpstreamPointSources: Calculate point source emissions over all
upstream areas of a vector of SUBIDs or all SUBIDs in a GeoData
table
HYPEtools 0.3.4 (2015-06-10)
Bug fixes
HYPEtools 0.3.3 (2015-06-09)
New functions and bug fixes
Highlights
Update for DirectUpstreamSubids()
Bug fixes
New Functions
SortGeoData: Sort an imported GeoData.txt file in downstream order,
so that all upstream sub-basins are listed in rows above downstream
sub-basins
HYPEtools 0.3.2 (2015-06-04)
New functions and bug fixes
New Functions
UpstreamGeoData: Calculate upstream sums and averages for selected
variables of imported GeoData.txt files
UpstreamGroupSLCClasses: Calculate averages of grouped SLC class
fractions calculated from imported GeoData.txt and GeoClass.txt or any
other user-defined grouping
EquallySpacedObs: Create equally spaced time series with missing
observations from a data frame with irregular observations
HYPEtools 0.3.1 (2015-01-28)
New functions and bug fixes
Highlights
Added new functions, mostly small helper functions: AnnualRegime,
HeadwaterSubids, MapRegionalSources, OutletSubids, ReadAquiferdata,
WriteAquiferdata, ReadMgmtData, WriteMgmtData
Various small bug fixes
HYPEtools 0.3.0 (2014-11-21)
New functions and bug fixes
Highlights
Bug fixes
Read and write functions for pmsf.txt files
Write function for lake data
New function UpstreamObs() for extracting upstream average forcing,
includes fortran code
HYPEtools 0.2.5 (2014-10-22)
New functions and bug fixes
Highlights
New attribute “timestep” in ReadBasinOutput()
Extended functionality of ConvertDischarge()
Bug fixes
New Functions
AllDownstreamSubids: Find all SUBIDs of downstream sub-catchments
along the main stem for a single sub-catchment
OutletIds: Find the identifier of model domain outlets, i.e. the
“downstream” ID of outlet catchments, in a GeoData file
MergeXobs: Merge two Xobs data frames, with handling of overlapping
time periods and time periods gaps as well as merging of common
columns
HYPEtools 0.2.4 (2014-08-18)
New functionalities and bug fixes
HYPEtools 0.2.3 (2014-07-14)
New functionalities and bug fixes
HYPEtools 0.2.2 (2014-07-08)
New functionalities and bug fixes
HYPEtools 0.2.1 (2014-05-18)
Improved functionality
Highlights
Several functions were added to the package, most noteworthy the
first plot function, PlotMapOutput()
HYPEtools 0.1.2 (2014-02-10)
Import/Export for common HYPE files complete
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