Added boxHeaderGrob() for creating flowchart boxes with
centered header text and left-justified body text (e.g., bullet points).
Fully compatible with all Gmisc flowchart helpers
(coords(), distance(),
connectGrob(), spreadVertical(),
alignHorizontal(), etc.).
Added deep-path support for subelement and
reference in alignVertical,
alignHorizontal, spreadVertical,
spreadHorizontal, and moveBox, allowing nested
paths (e.g. c("detail", 1)) and multiple targets
(e.g. list(c(...), c(...))).
Added helpers get_list_element_by_path() and
set_list_element_by_path() to support nested selection and
assignment.
Updated examples (inst/examples/alignBox_ex.R,
inst/examples/spreadBox_ex.R) and added tests
(tests/testthat/test-align-deep-path.R,
tests/testthat/test-spread-move-deep-path.R,
tests/testthat/test-align-subelement-deep.R) covering
deep-path selection and informative error messages.
Fixed subelement resolution when a list of boxes is
piped into alignHorizontal() or
alignVertical() while providing a named
reference argument; the piped list is now unwrapped so
nested targets (e.g., c("step_1", "non-surgical")) are
correctly found and aligned.
Fixed many-to-one connectors (N, fan_in_center, fan_in_top) to
handle container-like inputs by automatically targeting the first box
within a group.
Changes for 3.1.0
Added support for lists of boxes in prConvert2Coords,
allowing for merged bounding box calculations in npc
units.
Extended moveBox to support moving lists of boxes
(groups) as a single unit, with improved name preservation.
Added subelement parameter to
spreadVertical, spreadHorizontal,
alignVertical, and alignHorizontal for
targeting specific elements within a list of boxes.
Added box label connector
Improved connecting lines between boxes
Added a .margin and a more flexble .to/.from management for the box
spreading
Improved connecting boxes
Changes for 3.0.4
Update for new CRAN policy
Improved cpp code for bezier arrows
Changes for 3.0.3
Fixed bug in getSvdMostInfluential with bad names appearing in graph
due to bad reference, thanks Felipe (see issue #66)
Changes for 3.0.1
Fixed pathJoin for vector inputs
Added difftime as numeric to
getDescriptionStatsBy
Changes for 3.0.0
BREAKING: The input parameters have changed for
getDescriptionStatsBy and dropped old deprecated parameter
conversion:
show_missing_digits ->
show_missing.digits
show_missing -> useNA
sig.limit -> statistics.sig_lim
two_dec.limit ->
statistics.two_dec_lim
Fixed bug in getDescriptionStatsBy when providing a
character input
Made getDescriptionStatsBy S3 aware with
tidyselect pattern for generating tables.
The yamlDump can now take a character string and assume
that is a json that needs conversion
Added set_column_labels and
set_column_units for using dplyr syntax for
Hmisc::label and Hmisc::units operations.
The units column in getDescrptionStatsBy can now have a
custom name (also changed default name to “Units”)
Changed addBoxClr to addBoxStyle for Transition-class (minor
breaking change)
Changes for 2.1.0
getSvdMostInfluential now returns the data needed for
plotting
added fontsize dependent padding to boxGrob
Changes for 2.0.2
Minor RCPP changes
Changes for 2.0.1
Minor CRAN check fixes
Changes for 2.0.0
BREAKING: The mergeList merges vectors
into vectors instead of assuming that they should be bound as a
matrix
Changes for 1.11.0
Fix for adjustment in box justification, thanks Carl Suster
Fix for incorrect boxPropGrob height calculation, bad
handling of missing arguments and ignored gpar arguments (issue
#46)
Slightly changed color scheme for boxGrobs
Added moveBox for moving boxGrob
objects
Added alignVertical and alignHorizontal
for aligning boxGrob objects
Added spreadVertival and spreadHorizontal
for spreading boxGrob objects over the
viewport
Styling of htmlTable removed due to the 2.0 api change,
nbow. the css.rgroup should be set using set
htmlTable::setHtmlTableTheme or by passing the
output through
htmlTable::addHtmlTableStyle.
The boxes now accept language input, thanks Carl Suster
Changes for 1.10.0
Added yamlDump for quick object review
Added pathJoin for joining paths without worrying about
trailing ‘/’
Added time2spanTxt for printing time span
descriptor
Changes for 1.9.1
Fixed new handling of data.frame stringsAsFactors in
next R release
Changes for 1.9.0
Added id as a parameter to the Transtion-class
Fixed bad no. of popViewport() not adequately leaving
the transitionClass viewport tree
Fixed bad viewport naming in
Transition-class that was creating a conflict with multiple
plots
Changes for 1.8.1
Fixed cran requirement where class(x) != class(y) could
be of length > 1
Changes for 1.8
Added digits.nonzero for allowing values with extra
digits where values are close to 0
Changed sprintf to txtRound for many of
the descriptors
Fixed vignette names for CRAN
Fixed bug in retrieve
Changes for 1.7
Expressions are now allowed in boxGrob (Thanks Alan
Haynes)
Added lodash similar functions retrieve and
has
Changes for 1.6.4
Removed changed constant for STRICT_R_HEADERS compliance
Changes for 1.6.3
Fixed minor issue related to new CPP error
Changes for 1.6.1
Removed test for CRAN compliance
Changed abs to fabs in bezierArrowFn’s c++ code
Changes for 1.6
Added skip_shadows to Transition-class
Changes for 1.4.3
Fixes non-existing values in different by-groups (issue #24)
Changes for 1.4.2
Added box functions between and coords
Added more Transition options for arrows
Added default options for Transition,
boxGrob and boxGrobProp
Changes for 1.4.1
Fixed merge with master external descGetMissing (Thanks
Peter)
Changes for 1.4
Added grid grobs for creating boxes and connecting these with
lines
Added checkmate for argument checking
Changes for 1.3.2
Fixed bug when providing getDescriptionStatsBy with
custom function
Added ability add alternative column instead of the p-value
column
Changes for 1.3.1
Fixed use_unit issue #16
Fixed bug in vignette
Added R-version dependency
Changes for 1.3
The Transition-class can now handle non-square matrix
input
The total column is now also passed through the txtInt
function
Fixed header_count bug in getDescriptionStatsBy -
thanks rvlevitin (iss#13)
Changes for 1.2
Fixed the naming of proportions in
getDescriptionStatsBy
If a variable has units set it can now be added into the row name in
getDescriptionStatsBy
Merged with the Grmd-package allowing direct access to the
docx_document()
Prepared for stricter requirements for R 3.3
Changes for 1.1
Created the Transition class that can handle multiple
transitions in contrast to transitionPlot
The bezierArrowGradient has a simpler handling of the
gradient proportion
The bezier arrows have been rewritten with a > 20x speed
increase
The getDescriptionStatsBy function is now accompanied
by mergeDesc that takes care of merging everything into one
table
Added ability to customize statistics for
getDescriptionStatsBy
transitionPlot: The color_bar_labels are now
automatically extracted from the transition_flow input
transitionPlot: Fixed bug so that the end viewport is
the root
transitionPlot: Fixed grid arrow bug
transitionPlot: When using 3D matrices and two colors
there should only be a colorbar when used with gradient arrows
transitionPlot: If line width is smaller than the
minimum width it is now set to 0
Changes for 1.0
htmlTable and some of the formatters have now moved to
the htmlTable package
forestplot2 has now moved to the
forestplot package
added the mergeDesc in order to merge lists from
getDescriptionStatsBy for
All functions default to html = TRUE instead of
FALSE
show_missing is now useNA in order to
match the table() call handling of missing
Fixed a few bugs
Changes for 0.6.8
Applied the DRY-documentation principle
Changes for 0.6.7
Added an interactive() check before using the viewer
Minor adjustments to the htmlTable handling of no-blank
spaces ( )
htmlTable now remember the … argument and passes it on
to the print.htmlTable() and cat()
Added figCapNo and associated caption function for numbering figure
captions
Improved documentation
Changes for 0.6.6
Improved the htmlTable viewer handling (thanks Adam
Smith)
Changes for 0.6.5
Changed the getDescriptionsBy example to work with the
htmlTable() instead of the Hmisc::latex()
Fixed getDescriptionsBy bug - the Total column failed when specified
to be last - thanks Alexandre Vivot
Added example for side-by side plotting for
forestplot2
As of 0.98.932 the knitr package isn’t loaded, instead the metadata
or device options indicates that it is knitting
htmlTable bug: The function can now handle matrices
without column names
htmlTable bug: The function deletes and warns when
n.rgroup/n.cgroup < 1
Changes for 0.6.4
Bug fix for alt_col not respecting missing rgroup - added also a
simple matrix output test
Added visual tests for htmlTable and moved one of the
examples there
Added tableCSSclass option for htmlTable - thanks
jphiplip
Changes for 0.6.3
Changed versioning to a 3-digit system as suggested by Yihui Xie
http://yihui.name/en/2013/06/r-package-versioning/
Added alt_col for coloring the rows of the htmlTable
rgroups - thanks raredd
Changes for 0.6.2.3
Roxygen2 v 4.0.0 upgrade + other doc upgrades
Percentages are now default without space between the number and the
%-sign in order to better comply with English language standards
Changes for 0.6.2.2
transitionPlot - fixed arrow size and empty boxes
outputInt now defaults to the ‘,’ formatting according to the
English language. It also has no-breaking space if html option is set.
It can also handle complex vector/matrix input.
describeMean now allows for custom plus minus sign
describe* now use the outputInt with the default english
settings
Minor fix for the print.htmlTable
Changes for 0.6.2.1
bezierArrowSmplGradient changed name to just
bezierArrowGradient
Added visual tests and debugged the
bezierArrowGradient/transitionPlots
Externalized all internal functions of the transitionplot
Added proportions for the transitionplot
Managed thanks to Baptiste Auguié help on Stack Overflow I know now
how to calculate the height of axisGrobs - useful both in the
forestplot2 and the transitionPlot
functions
Fixed the adjustment of the xlabel, the lineheight argument, the
viewports for the forestplot2 function
Simplified the transitionPlot defaults
Fixed a gradient bug in bezierArrowGradient
Changes for 0.6.2.0
Added the viewer for htmlTable allowing for direct
visualisation in RStudio of the tables. Outside RStudio the
utils::browseURL is used.
htmlTable added table spanner functionality, some
man-page update, removed the default NULL arguments in favor of the
missing() funciton, and a few minor bugfixes.
Changes for 0.6.1.1
The bezierArrowSmpl now uses “mm” internally instead of the default
“npc” - this improves the rendering as the “npc” is dependent on the
axis. A few adjustments to arrow functions were also added.
Bugfixes for the bezierArrowSmplGradient.
Bugfixed missing data for getDescriptionStats and generated a
test-file in order to check most combinations that they work
Fixed the legend-bug for forestplot2 when using
points
Changes for 0.6.1.0
Added legend markers option for the forestplot2
function
Changes for 0.6.0.2
Fixed ticks for forestplot2 - the
prFpGetGraphTicksAndClips used the exp() for regular values.
Cleaned up some of the code for the fpDrawXXXCI functions
Changes for 0.6.0.1
Changed depends and imports for the package
Changes for 0.6.0.0
For LibreOffice compatibility htmlTable now includes
caption inside the table when compatibility=‘LibreOffice’
Split the package to exclude regression functions, these are now in
the Greg package
Added title and label options to transitionPlot
Added a size-autofit for the transitionPlot text
Changes for 0.5.8.2
htmlTable caused too large colspans when cgroup was
set
Changes for 0.5.8.1
Bugfixes for printC&A and getDesc.
Added a pvalueFormatter
Fixed Intercept bug for get/printCrudeAndAdjusted - didn’t include
the intercept term
Changes for 0.5.8.0
Added to forestplot2 ability create customly drawn
confidence intervals/boxes
Generated diamond, circle and point custom draw functions for
forestplot2
Added forestplot2 compatibility for the summary
Minor bugfixes behind the scenes
Fixed issue with getCrudeAndAdjustedModelData mixing up rows for rms
objects
Changes for 0.5.7.11
Added tfoot option to the htmlTable function
Switched to the proper caption-align for htmlTable
Added options for htmlTable() where you now can format
the table counter text and change to Arabic numerals.
Bug: changed just to align for printCrudeAndAdjustedModel()
Changes for 0.5.7.10
Switched the order in the multi-line forestplot for the legend
Changes for 0.5.7.9
Bugfix for getTics so that it can handle small spans < .5
Changes for 0.5.7.8
Bugfix for forestplot2 with headers
Changes for 0.5.7.7
Added title for forestplot2
Fixed the margins for forestplot2
Changes for 0.5.7.6
Added more legend border and fill options to the
forestplot2
Added the legend.title option in the forestplot2
Fixed the auto-sizing of the area for the
forestplot2
Rows/elements with NA are now not included in the zero-line as they
are considered to be headers
Changes for 0.5.7.5
Added more legend options to the forestplot2
Minor changes to simleRmsAnova
Changes for 0.5.7.4
Added some debugging info for the getDescriptionStatsBy
with more detailed errors when unit/total columns don’t match
Changes for 0.5.7.4
Externalized many of the forestplot2 functions and
added the option of having a set line height
Added new_page option for grid-based plots
Updated the simpleRmsAnova function
Changes for 0.5.7.3
Removed the plot.new() from transitionplot, this is in order to
allow splitting plots, adding it to a viewport etc.
Changes for 0.5.7.2
Added the lineheight option for forestplot2
Fixed the R CMD Check –as-cran to run without any objections
Updated dependencies
Changes for 0.5.7.1
Fixed rownames in printCrudeAndAdjusted
Changed printCrudeAndAdjusted to return a matrix subclass instead of
immediately printing
Ran through som Pkg-check and hopefully cleared out some bugs
Changes for 0.5.7.0
getCrudeAndAdjusted is now an S3 method that has a default method
and a method for rms objects. The rms relies on rms:::summaryrms and
returns a matrix that is pruned and used for the situation.
printCrudeAndAdjusted has externalized a lot of its functions and
handling of the new rms getCrudeAndAdjusted output
printCrudeAndAdjusted now ignores any interaction variables
Changes for 0.5.6.1
forestplot2 fix so that it properly handles data.frames
as arguments
printCrudeAndAdjustedModel has a better handling of the groups
argument
Improved import to importFrom
Changes for 0.5.6.0
The forestplot2 is updated - the widths are now
relative to the window size, there is a margin option, and many of the
inside functions have moved to helpers outside. Also fixed the alignment
of the summary label to work better.
Fixed a minor bug for cgroup without rowlabels
Added default_ref for both getDescriptionStatsBy and
describeProp function.
The percentage sign in getDescriptionStatsBy,
describProp and describeFactors is now optional.
A minor bug fix for cgroup.just for the htmlTable
function
Changes for 0.5.4.5
Minor fix to rownames in htmlTable… again.
Had to remove the “terms” option from the plotHR rms:::cph()
alternative as it did caused an error ** The error seems to stem from
predictrms() where the Adjto function deletes the adjto output in: **
adjto <- if (int.pres) ** model.matrix(Terms.ns, adjto)[, -1, drop =
FALSE] ** I will have to look into it one day…
Changes for 0.5.4.4
Fixed a rowname problem for htmlTable
Changed the rowlabel.pos to be by default at the bottom, seems more
natural with multi-layered tables.
Changes for 0.5.4.3
Fixed a caption problem for htmlTable
Changes for 0.5.4.2
bezierArrowSmpl needed a color for the arrow line as it turned black
by default. The line was added to fix the anti-aliasing issue.
Changed CSS-defaults for groups when using the function
printCrudeAndAdjusted
Changes for 0.5.4.2
Minor regular expression fix for printCrudeAndAdjusted for the
addref. function
Minor fix for cgroup.just as this was affected by the previous
update
Fixed the htmlTable cgroup.just issue
The htmlTable is now rendering correct w3c-validated
code
Changes for 0.5.4.1
Minor improvement to the htmlTable function with align
now accepting vectors
Added multiline cgroup alternative
Changes for 0.5.4.0
Added a robust alternative for rms ols regressions that now can use
the sandwich package
Changes for 0.5.3.5
Added mergeLists() function for merging multiple
lists
Changes for 0.5.3.4
New options for plotHR
Changes for 0.5.3.3
Minor fixes to the bezier arrows
Update for transitionPlot to avoid overlapping
background arrows
Changes for 0.5.3.2
Thank you Adam Van Iwaarden for fixing the htmlTable
alignment and a few bugs!
Bug fix for prGetModelVariables affecting model with functions as
parameters
Added poisson (link=log) to the getCrudeAndAdjusted function to ret
exp() values
Changes for 0.5.3.1
Added transitionPlot ability to indicate proportions in
the rectangles
Changes for 0.5.3.0
Added the bezier arrows to the transition plot
Added a bridge option for the transition plot arrows
Bugfix for the bezierSmplGradient
Changes for 0.5.2.0
Added the bezier arrows.
Changes for 0.5.1.1
Added lwd parameters to the transitionPlot lines
Changed the transition matrix - the sums were not necessary as they
easily can be calculated from the rowSums/colSums.
Changes for 0.5.1.0
Added the transitionPlot
Changes for 0.5.0.2
Bugfix for htmlTable - throws error if a one
dimensional x is provided
Changes for 0.5.0.1
Bugfix for plotHR - there were issues with getting the model
data
Added option for having specific digits in
printCrudeAndAdjustedModel in the model and the descriptive part
Changes for 0.5.0.0
Added the option of having descriptive data to the
printCrudeAndAdjustedModel
A completely new way to extract the model dataset
Changes for 0.4.9.1
Change the option for printCrudeAndAdjustedModel from just html to
output alternatives html, latex or raw
Altered the name of the describe_ functions to follow the camelCase
style, i.e. describe_mean is now describeMean
Changes for 0.4.9.0
Added the getSvdMostInfluential function
Changes for 0.4.8.2
The simpleRmsAnovaLatex now has a better handling of the low
p-values
Fixed a minor but with printCrudeAndAdjusted with the automated
reference
Changes for 0.4.8.2
Added the option of hadding a total column even in “vertical”
mode
Changed parameter names hrzl_prop.show_perc to
total_col_show_perc
Bugfix: The total column causes errors if the by contains missing
values
Changes for 0.4.8.1
Fixed a few bugs to the forestplot2
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