Provides methods for automatic calculation of gene scores from gene count tables, including a Z-score method that requires a table of samples being scored and a count table with control samples; a geometric mean method that does not rely on control samples; and a principal component-based method that summarizes gene expression using user-selected principal components. The Z-score and geometric mean approaches are described in Kim et al. (2018) <doi:10.1089/jir.2017.0127>.
| Version: | 0.2.0 |
| Imports: | stats |
| Published: | 2025-11-26 |
| DOI: | 10.32614/CRAN.package.GeneScoreR |
| Author: | Aris Syntakas [aut, cre] |
| Maintainer: | Aris Syntakas <sejjsyn at ucl.ac.uk> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | GeneScoreR results |
| Reference manual: | GeneScoreR.html , GeneScoreR.pdf |
| Package source: | GeneScoreR_0.2.0.tar.gz |
| Windows binaries: | r-devel: GeneScoreR_0.2.0.zip, r-release: GeneScoreR_0.2.0.zip, r-oldrel: GeneScoreR_0.2.0.zip |
| macOS binaries: | r-release (arm64): GeneScoreR_0.2.0.tgz, r-oldrel (arm64): GeneScoreR_0.2.0.tgz, r-release (x86_64): GeneScoreR_0.2.0.tgz, r-oldrel (x86_64): GeneScoreR_0.2.0.tgz |
| Old sources: | GeneScoreR archive |
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