GSSTDA: Progression Analysis of Disease with Survival using Topological
Data Analysis
Mapper-based survival analysis with transcriptomics data is designed to carry out.
Mapper-based survival analysis is a modification of Progression Analysis of Disease (PAD)
where survival data is taken into account in the filtering function. More
details in: J. Fores-Martos, B. Suay-Garcia, R. Bosch-Romeu, M.C. Sanfeliu-Alonso,
A. Falco, J. Climent, "Progression Analysis of Disease with Survival (PAD-S) by SurvMap
identifies different prognostic subgroups of breast cancer in a large combined set of transcriptomics
and methylation studies" <doi:10.1101/2022.09.08.507080>.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
base, cluster, stats, survival, utils, visNetwork, ComplexHeatmap, circlize, devtools |
| Suggests: |
rmarkdown, knitr, testthat (≥ 3.0.0) |
| Published: |
2024-06-01 |
| DOI: |
10.32614/CRAN.package.GSSTDA |
| Author: |
Miriam Esteve 
[aut, cre],
Raquel Bosch [aut],
Jaume Forés [aut],
Joan Climent [aut],
Antonio Falco [aut] |
| Maintainer: |
Miriam Esteve <miriam.estevecampello at uchceu.es> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
GSSTDA results |
Documentation:
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