Functions to import Applied Biosystems data files and process them in a highly flexible and interfaced framework. RT-MLPA application (gene-expression profiling and classification) is described in Mareschal, Ruminy et al (2015) doi:10.1016/j.jmoldx.2015.01.007. Gene-fusion detection is described in Mareschal, Palau et al (under review). Examples are provided for genotyping applications as well.
A short presentation of the project can be found on my personnal website.
Release sources and builds can be found in the CRAN repository :
install.packages("FSAtools")
Development sources are freely available on GitHub :
All this material is freely distributed under the GNU Public License 3, shipped with sources and builds.
Bugs, suggestions and help requests should be submitted using GitHub’s Issues (see ‘Availability’).
Release updates are tracked by the NEWS.Rd file, browsable on the CRAN repository (see ‘Availability’).
Individual commits can be followed on GitHub (see ‘Availability’).
Sylvain Mareschal <mareschal@ovsa.fr>