A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al., 2022 <doi:10.1016/j.isci.2022.104767>) or similar methods.
| Version: | 0.7 |
| Depends: | R (≥ 4.0) |
| Imports: | ggplot2, dplyr, networkD3, jsonlite, htmlwidgets, webshot2, stats, methods, grDevices |
| Suggests: | knitr |
| Published: | 2024-03-14 |
| DOI: | 10.32614/CRAN.package.EnrichIntersect |
| Author: | Zhi Zhao [aut, cre], Manuela Zucknick [aut], Tero Aittokallio [ctb] |
| Maintainer: | Zhi Zhao <zhi.zhao at medisin.uio.no> |
| BugReports: | https://github.com/ocbe-uio/EnrichIntersect/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/ocbe-uio/EnrichIntersect |
| NeedsCompilation: | no |
| Citation: | EnrichIntersect citation info |
| Materials: | README, NEWS |
| CRAN checks: | EnrichIntersect results |
| Reference manual: | EnrichIntersect.html , EnrichIntersect.pdf |
| Vignettes: |
EnrichIntersect (source, R code) |
| Package source: | EnrichIntersect_0.7.tar.gz |
| Windows binaries: | r-devel: EnrichIntersect_0.7.zip, r-release: EnrichIntersect_0.7.zip, r-oldrel: EnrichIntersect_0.7.zip |
| macOS binaries: | r-release (arm64): EnrichIntersect_0.7.tgz, r-oldrel (arm64): EnrichIntersect_0.7.tgz, r-release (x86_64): EnrichIntersect_0.7.tgz, r-oldrel (x86_64): EnrichIntersect_0.7.tgz |
| Old sources: | EnrichIntersect archive |
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