NEWS

DGEobj R Package

v1.1.2

• Made all Bioconductor packages optional (suggested)
• Added a new, minimal “mini” example object that has no internal Bioconductor-based features (ie normalization, analysis) to allow for clean, simple examples that do not depend on suggested packages
• Testing updated so that when Bioconductor suggested packages are unavailable the tests will not be run

v1.1.1

• Updated tests and examples so that when suggested packages are unavailable the examples and/or tests dependent on them are not run

v1.1

• made GenomicRanges package optional - used only for exon/gene levels
• added “protein” level data, reviewed/updated isoform data for proper handling
• added imputationMatrix as a type of metadata
• reworked reset to resolve issues and remove unneeded code
• updated tests and documentation

v1.0.3

• significant documentation review/updates
• underlying structure - added a few new fields and cleaned up unneeded methods
• updated the example object with additional information
• vignette now setup to use the precompiled paradigm

v1.0.1

• Initial public release to CRAN