Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE)
analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis
work-flow and utility functions: mapping/unit conversion, count normalization, accounting for
unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that
provides a flexible container to manage and annotate Differential Gene Expression analysis results.
| Version: |
1.0.6 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
assertthat, DGEobj (≥ 1.0.3), dplyr, methods, stats, stringr |
| Suggests: |
biomaRt, canvasXpress, conflicted, edgeR, glue, ggplot2, IHW, limma, knitr, qvalue, RNASeqPower, rmarkdown, statmod, sva, testthat, zFPKM |
| Published: |
2022-05-19 |
| DOI: |
10.32614/CRAN.package.DGEobj.utils |
| Author: |
John Thompson [aut],
Connie Brett [aut, cre],
Isaac Neuhaus [aut],
Ryan Thompson [aut] |
| Maintainer: |
Connie Brett <connie at aggregate-genius.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Materials: |
README, NEWS |
| In views: |
Omics |
| CRAN checks: |
DGEobj.utils results |