DGEobj.utils: Differential Gene Expression (DGE) Analysis Utility Toolkit

Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.

Version:	1.0.6
Depends:	R (≥ 3.5.0)
Imports:	assertthat, DGEobj (≥ 1.0.3), dplyr, methods, stats, stringr
Suggests:	biomaRt, canvasXpress, conflicted, edgeR, glue, ggplot2, IHW, limma, knitr, qvalue, RNASeqPower, rmarkdown, statmod, sva, testthat, zFPKM
Published:	2022-05-19
DOI:	10.32614/CRAN.package.DGEobj.utils
Author:	John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut]
Maintainer:	Connie Brett <connie at aggregate-genius.com>
License:	GPL-3
NeedsCompilation:	no
Language:	en-US
Materials:	README, NEWS
In views:	Omics
CRAN checks:	DGEobj.utils results

Documentation:

Reference manual:	DGEobj.utils.html , DGEobj.utils.pdf
Vignettes:	DGEobj.utils: An Example Workflow (source)

Downloads:

Package source:	DGEobj.utils_1.0.6.tar.gz
Windows binaries:	r-devel: DGEobj.utils_1.0.6.zip, r-release: DGEobj.utils_1.0.6.zip, r-oldrel: DGEobj.utils_1.0.6.zip
macOS binaries:	r-release (arm64): DGEobj.utils_1.0.6.tgz, r-oldrel (arm64): DGEobj.utils_1.0.6.tgz, r-release (x86_64): DGEobj.utils_1.0.6.tgz, r-oldrel (x86_64): DGEobj.utils_1.0.6.tgz
Old sources:	DGEobj.utils archive

Reverse dependencies:

Reverse imports:

signifinder

Linking:

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