Changed the arguments to summary.Bchronologyrun to allow for more
flexibility in the accumulation rate estimation
added a test (test_order.R) for when the order of the data set is
changed
Fixed a bug in the way Bchronology was returning the radiocarbon
dates when they weren’t given in depth order
Bchron 4.7.7
Added an example for reservoir correction in the vignette
Corrected new email address at UCD
Fixed bugs on the check page.
Bchron 4.7.6
Fixed an example in Bchronology that was adding titles/labels
incorrectly
Updated vignette to show how to customise plots
Fixed a bug where an error for identical positions (with no
thickness errors) was not being shown
Fixed an issue with positionNormalise
Fixed an issue with jitterPositions by replacing it with
artificialThickness that enables customised amounts of jittering when
there are identical positions and no thicknesses
Forced ids argument in BchronCalibrate and Bchronology to be unique
otherwise causes problems with plots
Bchron 4.7.5
Added in a BchronCheck function to allow for checking of all
argument types using checkmate
Added in positionEps argument to Bchronology to avoid positions
being simulated too close to each other and leading to numerical
underflow errors
Changed default colours of dates in plot.CalibratedDates and
plot.BchronologyRun
Added an extra check that all ageSds are bigger than zero
Allowed the option for calibrating dates out of calibration curve
range
Fixed bug that occurred with large 14C values close to upper range
of calibration curve
Changed the means by which starting values are created. This was to
fix a bug (issue #17 on GitHub) where a middle extreme date
(e.g. non-14C) could cause the starting values of the stratigraphically
ordered dates to fall beyond the range of the calibration curve.
Included option to allow bespoke starting values for complex
cores
Changed some of the algorithm details to avoid certain bugs with
numerical underflow problems (tested in test_all_chrons)
Bchron 4.7.4
Updated the BchronDensity and BchronDensityFast functions to show
lines on top of dates
Included ability in above functions to change amount of date
transparency
Used styler to make the syntax follow tidyverse style
guidelines
Fixed bug in starting values which occasionally produced values
before the extractDate
Fixed bug in choosePositions where position chosen was at the edge
of the domain
Bchron 4.7.3
Fixed a weird bug where some hdrs were coming out the wrong way in
plot.Bchronology
Add the ability to create OxCal style plots with the calibration
curve
Added a feature to plot individual dates in
plot.BchronCalibratedDates
Bchron 4.7.2
Included intcal20, shcal20, and marine20 new calibration curves
Bchron 4.7.1
Fixed a bug in Bchronology that caused incorrect predictions
Bchron 4.7.0
Fixed a(nother) small bug in predict.Bchronologies
Included proper testthat, travis, and code coverage
Bchron 4.6.1
Fixed bug in predict.Bchronologies
Bchron 4.6
Fixed two important bugs:
Fixed a mistake in BchronCalibrate that will cause calibrated to
have incorrect error ranges compared to OxCal
Fixed a problem that occurred in very straight chronologies where a
certain parameter would go to zero and cause numerical underflow
Bchron 4.5
Fixed some minor issues with ggplots
Added in code for scaling the x-axis
Bchron 4.4
Changed plots to use ggplot2 via ggridges
Bchron 4.3
Added some new functions:
dateInfluence, which works out how influential a single date is in a
core
coreInfluence, which tries to estimate the total uncertainty
reduction/increase between two Bchronology runs
choosePositions, which suggest new positions/depths to date to
maximally reduce uncertainty
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