Facilitates retrieval, transformation and analysis of the data from the Barcode of Life Data Systems (BOLD) database <https://boldsystems.org/>. This package allows both public and private user data to be easily downloaded into the R environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes, project codes, taxonomy, geography etc. It provides frictionless data conversion into formats compatible with other R-packages and third-party tools, as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | ape (≥ 5.5), BAT (≥ 2.0), data.table (≥ 1.13), dplyr (≥ 1.0.1), ggplot2 (≥ 3.3.2), httr (≥ 1.4.2), jsonlite (≥ 1.7), maps (≥ 3.3), methods, reshape2, rnaturalearth, sf (≥ 0.9.4), skimr (≥ 2.1.2), tidyr (≥ 1.1.1), utils, vegan (≥ 2.5.7) |
| Suggests: | Biostrings, BiocManager, msa, muscle |
| Published: | 2025-09-17 |
| DOI: | 10.32614/CRAN.package.BOLDconnectR |
| Author: | Sameer Padhye [aut, cre], Liliana Ballesteros-Mejia [aut], Sujeevan Ratnasingham [aut] |
| Maintainer: | Sameer Padhye <spadhye at uoguelph.ca> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | BOLDconnectR results |
| Reference manual: | BOLDconnectR.html , BOLDconnectR.pdf |
| Package source: | BOLDconnectR_1.0.0.tar.gz |
| Windows binaries: | r-devel: BOLDconnectR_1.0.0.zip, r-release: BOLDconnectR_1.0.0.zip, r-oldrel: BOLDconnectR_1.0.0.zip |
| macOS binaries: | r-release (arm64): BOLDconnectR_1.0.0.tgz, r-oldrel (arm64): BOLDconnectR_1.0.0.tgz, r-release (x86_64): BOLDconnectR_1.0.0.tgz, r-oldrel (x86_64): BOLDconnectR_1.0.0.tgz |
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