AnnotationBustR: Extract Subsequences from GenBank Annotations
Extraction of subsequences into FASTA files from GenBank annotations where gene names may vary among accessions. Borstein & O'Meara (2018) <doi:10.7717/peerj.5179>.
| Version: | 2.0 |
| Depends: | R (≥ 4.5) |
| Imports: | Biostrings (≥ 2.78.0), BSgenome (≥ 1.78.0), dplyr (≥ 1.2.1), GenomicFeatures (≥ 1.62.0), GenomicRanges (≥ 1.62.0), magrittr (≥ 2.0.5), rentrez (≥ 1.2.4), stringr (≥ 1.6.0) |
| Suggests: | knitr, rmarkdown, seqinr, testthat |
| Published: | 2026-08-31 |
| DOI: | 10.32614/CRAN.package.AnnotationBustR |
| Author: | Samuel R. Borstein
 [aut, cre],
Brian O'Meara
[aut] |
| Maintainer: | Samuel R. Borstein <sam at borstein.com> |
| BugReports: | https://github.com/sborstein/AnnotationBustR/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/sborstein/AnnotationBustR, https://www.ncbi.nlm.nih.gov/nuccore, https://peerj.com/articles/5179/, http://sborstein.github.io/AnnotationBustR/ |
| NeedsCompilation: | no |
| Citation: | AnnotationBustR citation info |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | AnnotationBustR results |
Documentation:
| Reference manual: | AnnotationBustR.html , AnnotationBustR.pdf |
| Vignettes: |
AnnotationBustR Tutorial (source, R code) |
Downloads:
| Package source: | AnnotationBustR_2.0.tar.gz |
| Windows binaries: | r-devel: AnnotationBustR_2.0.zip, r-release: AnnotationBustR_2.0.zip, r-oldrel: AnnotationBustR_2.0.zip |
| macOS binaries: | r-release (arm64): AnnotationBustR_2.0.tgz, r-oldrel (arm64): AnnotationBustR_2.0.tgz, r-release (x86_64): AnnotationBustR_2.0.tgz, r-oldrel (x86_64): AnnotationBustR_1.3.0.tgz |
| Old sources: | AnnotationBustR archive |
Linking:
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