AnanseSeurat: Construct ANANSE GRN-Analysis Seurat
Enables gene regulatory network (GRN) analysis on single cell clusters,
using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>.
Export data from 'Seurat' objects, for GRN analysis by 'ANANSE'
implemented in 'snakemake'. Finally, incorporate results for visualization
and interpretation.
| Version: |
1.2.0 |
| Depends: |
R (≥ 3.50) |
| Imports: |
dplyr, ggplot2, ggpubr, magrittr, patchwork, png, purrr, rlang, Seurat, stringr, utils |
| Suggests: |
covr, knitr, rmarkdown, Signac, testthat (≥ 3.0.0) |
| Published: |
2023-11-11 |
| DOI: |
10.32614/CRAN.package.AnanseSeurat |
| Author: |
Jos Smits  [aut,
cre, cph],
Huiqing Jo Zhou
[aut, fnd, cph] |
| Maintainer: |
Jos Smits <Jsmits at science.ru.nl> |
| BugReports: |
https://github.com/JGASmits/AnanseSeurat/issues |
| License: |
Apache License (≥ 2) |
| URL: |
https://github.com/JGASmits/AnanseSeurat/ |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
AnanseSeurat results |
Documentation:
Downloads:
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