AdmixPoly: Global and Local Admixture Inference in Polyploids
Provides functions to perform global (genome-wide) and local admixture inference from bi- and multi-allelic marker dosages (discrete or continuous) in polyploid species.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | Rcpp, purrr, utils, dplyr (≥ 1.1.0), tidyr, tibble, ggplot2, magrittr, Matrix, data.table |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown |
| Published: | 2026-06-08 |
| DOI: | 10.32614/CRAN.package.AdmixPoly |
| Author: | Simon Rio  [aut,
cre],
Tristan Mary-Huard
[aut],
Franck Gauthier
[aut] |
| Maintainer: | Simon Rio <simon.rio at cirad.fr> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| SystemRequirements: | A system with a C++ compiler supporting OpenMP |
| Language: | en-US |
| Materials: | README |
| CRAN checks: | AdmixPoly results [issues need fixing before 2026-06-23] |
Documentation:
| Reference manual: | AdmixPoly.html , AdmixPoly.pdf |
| Vignettes: |
AdmixPoly-vignette (source, R code) |
Downloads:
| Package source: | AdmixPoly_1.0.0.tar.gz |
| Windows binaries: | r-devel: AdmixPoly_1.0.0.zip, r-release: AdmixPoly_1.0.0.zip, r-oldrel: AdmixPoly_1.0.0.zip |
| macOS binaries: | r-release (arm64): AdmixPoly_1.0.0.tgz, r-oldrel (arm64): AdmixPoly_1.0.0.tgz, r-release (x86_64): AdmixPoly_1.0.0.tgz, r-oldrel (x86_64): AdmixPoly_1.0.0.tgz |
Linking:
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