Provides tools for antimicrobial resistance surveillance, epidemiological analysis, temporal trend detection, early warning detection, spatial cluster identification, and risk factor analysis. The package supports analysis of antimicrobial resistance patterns, resistance to multiple antimicrobial classes, temporal surveillance, and spatial epidemiology for applications in veterinary, medical, and One Health research. Antimicrobial resistance surveillance approaches are informed by guidelines from WHO (2023) <https://www.who.int/publications/i/item/9789240076600> and WOAH (2024) <https://www.woah.org/fileadmin/Home/eng/Health_standards/tahc/2024/en_chapitre_antibio_harmonisation.htm>. Statistical methods include cumulative sum (CUSUM) monitoring (Page, 1954) <doi:10.1093/biomet/41.1-2.100>, exponentially weighted moving average (EWMA) monitoring (Roberts, 1959) <doi:10.1080/00401706.1959.10489860>, Local Moran's I spatial analysis (Anselin, 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x>, and multidrug- and extensively drug-resistant classification (Magiorakos et al., 2012) <doi:10.1111/j.1469-0691.2011.03570.x>.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr, ggplot2, rlang, sf, spdep, stats |
| Suggests: | covr, testthat (≥ 3.0.0) |
| Published: | 2026-09-12 |
| DOI: | 10.32614/CRAN.package.AMRsurveilR (may not be active yet) |
| Author: | Vinodhkumar Obli Rajendran [aut, cre], Keerthi Aaradhana [aut] |
| Maintainer: | Vinodhkumar Obli Rajendran <vinodhkumar.rajendran at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Language: | en-US |
| CRAN checks: | AMRsurveilR results |
| Reference manual: | AMRsurveilR.html , AMRsurveilR.pdf |
| Package source: | AMRsurveilR_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): AMRsurveilR_0.1.0.tgz, r-release (x86_64): AMRsurveilR_0.1.0.tgz, r-oldrel (x86_64): AMRsurveilR_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=AMRsurveilR to link to this page.
Need a high-speed mirror for your open-source project?
Contact our mirror admin team at info@clientvps.com.
This archive is provided as a free public service to the community.
Proudly supported by infrastructure from VPSPulse , RxServers , BuyNumber , UnitVPS , OffshoreName and secure payment technology by ArionPay.