Inference Tool for Antibody Haplotype R package rabhit version 0.4.0 Infers V-D-J (Variable-Diversity-Joining) haplotypes and gene deletions from AIRR-seq (Adaptive Immune Receptor Repertoire sequencing) data for Ig (Immunoglobulin) and TR (T cell Receptor) chains, based on J (Joining), D (Diversity), or V (Variable) genes as anchor, by adapting a Bayesian framework. It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene. Citation: Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>. Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>. Software Depends: R (>= 3.5.0) Imports: ggplot2 (>= 3.2.0), dplyr (>= 1.0.0), tidyr (>= 1.0.0), cowplot (>= 0.9.1), gtable (>= 0.3.0), grid, stats, utils, graphics, grDevices Suggests: knitr, rmarkdown, plotly (>= 4.7.1), htmlwidgets (>= 1.3.0), ggdendro (>= 0.1.20), piglet, testthat (>= 3.0.0) Ayelet Peres <ayelet.peres@yale.edu> Comprehensive R Archive Network (CRAN) Ayelet Peres [aut, cre], Moriah Gidoni [aut], Gur Yaari [aut, cph] CC BY-SA 4.0 2026-07-24 application/tgz https://CRAN.R-project.org/package=rabhit doi:10.32614/CRAN.package.rabhit