Last updated on 2025-12-07 07:50:47 CET.
| Package | ERROR | OK |
|---|---|---|
| CohortSymmetry | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.2.4
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'visOmopResults', 'flextable', 'gt', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [138s/173s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(CohortSymmetry)
>
> test_check("CohortSymmetry")
===========================>--- 89% | ETA: 0s
===========================>--- 89% | ETA: 0s
Saving _problems/test-plotTemporalSymmetry-26.R
===========================>--- 89% | ETA: 0s
-- 1 combination of 4 had index always before marker
-- 1 combination of 4 had index always before marker
===========================>--- 89% | ETA: 0s
===========================>--- 89% | ETA: 0s
[ FAIL 1 | WARN 42 | SKIP 59 | PASS 16 ]
══ Skipped tests (59) ══════════════════════════════════════════════════════════
• On CRAN (55): 'test-attrition.R:2:3', 'test-attrition.R:63:3',
'test-attrition.R:149:3', 'test-attrition.R:310:3', 'test-attrition.R:397:3',
'test-attrition.R:461:3', 'test-attrition.R:592:3', 'test-attrition.R:769:3',
'test-dbs.R:2:3', 'test-dbs.R:50:3', 'test-eunomia.R:2:3',
'test-eunomia.R:65:3', 'test-generateSequenceCohortSet.R:3:3',
'test-generateSequenceCohortSet.R:20:3',
'test-generateSequenceCohortSet.R:59:3',
'test-generateSequenceCohortSet.R:99:3',
'test-generateSequenceCohortSet.R:156:3',
'test-generateSequenceCohortSet.R:208:3',
'test-generateSequenceCohortSet.R:262:3',
'test-generateSequenceCohortSet.R:291:3',
'test-generateSequenceCohortSet.R:333:3',
'test-generateSequenceCohortSet.R:359:3',
'test-generateSequenceCohortSet.R:430:3',
'test-generateSequenceCohortSet.R:518:3',
'test-generateSequenceCohortSet.R:666:3',
'test-generateSequenceCohortSet.R:754:3',
'test-generateSequenceCohortSet.R:767:3',
'test-generateSequenceCohortSet.R:779:3',
'test-generateSequenceCohortSet.R:791:3',
'test-generateSequenceCohortSet.R:803:3',
'test-generateSequenceCohortSet.R:821:3',
'test-generateSequenceCohortSet.R:839:3',
'test-generateSequenceCohortSet.R:851:3',
'test-generateSequenceCohortSet.R:862:3',
'test-generateSequenceCohortSet.R:873:3',
'test-generateSequenceCohortSet.R:897:3', 'test-plotSequenceRatio.R:2:3',
'test-plotSequenceRatio.R:42:3', 'test-plotSequenceRatio.R:80:3',
'test-plotTemporalSymmetry.R:43:3', 'test-plotTemporalSymmetry.R:86:3',
'test-summariseSequenceRatios.R:204:3',
'test-summariseSequenceRatios.R:413:3',
'test-summariseSequenceRatios.R:518:3',
'test-summariseSequenceRatios.R:599:3',
'test-summariseSequenceRatios.R:754:3',
'test-summariseSequenceRatios.R:792:3',
'test-summariseSequenceRatios.R:830:3',
'test-summariseSequenceRatios.R:868:3',
'test-summariseTemporalSymmetry.R:71:3',
'test-summariseTemporalSymmetry.R:96:3', 'test-tableSequenceRatios.R:46:3',
'test-tableSequenceRatios.R:70:3', 'test-tableTemporalSymmetry.R:46:3',
'test-tableTemporalSymmetry.R:70:3'
• {gt} is not installed (2): 'test-tableSequenceRatios.R:2:3',
'test-tableTemporalSymmetry.R:2:3'
• {visOmopResults} is not installed. (2):
'test-summariseSequenceRatios.R:112:3',
'test-summariseSequenceRatios.R:177:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plotTemporalSymmetry.R:26:3'): plot working ────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `plotTemporalSymmetry(result = result)`: The package "visOmopResults" is required.
Backtrace:
▆
1. └─CohortSymmetry::plotTemporalSymmetry(result = result) at test-plotTemporalSymmetry.R:26:3
2. └─rlang::check_installed("visOmopResults")
[ FAIL 1 | WARN 42 | SKIP 59 | PASS 16 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc