Last updated on 2025-12-20 08:49:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 8.82 | 380.67 | 389.49 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 7.34 | 143.01 | 150.35 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 22.00 | 623.45 | 645.45 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 21.00 | 596.00 | 617.00 | OK | |
| r-devel-windows-x86_64 | 1.1.0 | 15.00 | 354.00 | 369.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 11.75 | 332.39 | 344.14 | WARN | |
| r-release-linux-x86_64 | 1.1.0 | 8.84 | 329.79 | 338.63 | WARN | |
| r-release-macos-arm64 | 1.1.0 | OK | ||||
| r-release-macos-x86_64 | 1.1.0 | 8.00 | 250.00 | 258.00 | OK | |
| r-release-windows-x86_64 | 1.1.0 | 14.00 | 344.00 | 358.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.0 | 8.00 | 297.00 | 305.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.0 | 20.00 | 466.00 | 486.00 | OK |
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: namespace ‘seqHMM’ is not available and has been replaced
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘tna-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cliques
> ### Title: Identify Cliques in a Transition Network
> ### Aliases: cliques cliques.tna cliques.group_tna
>
> ### ** Examples
>
> model <- tna(group_regulation)
>
> # Find 2-cliques (dyads)
> cliq <- cliques(model, size = 2)
>
> model <- group_tna(engagement_mmm)
Error in `[.data.table`(out, , `:=`(ll, logSumExp(log_alpha[time == time[.N]])), :
attempt access index 6/6 in VECTOR_ELT
Calls: group_tna ... posterior_probs -> posterior_probs.mhmm -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library("tna"))
> library("testthat")
Attaching package: 'testthat'
The following object is masked from 'package:tna':
compare
>
> test_check("tna")
Error in `source_dir()`:
! Failed to evaluate './helper-mock.R'.
Caused by error in `[.data.table`:
! attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::test_check("tna")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─tna::group_tna(engagement_mmm) at ./helper-mock.R:47:1
15. │ ├─tna::group_model(x = x, type = "relative", ...)
16. │ └─tna:::group_model.mhmm(x = x, type = "relative", ...)
17. │ ├─tna:::group_model.default(...)
18. │ │ └─group %m% seq_len(nrow(x))
19. │ ├─base::summary(x)
20. │ └─seqHMM:::summary.mhmm(x)
21. │ └─seqHMM::posterior_cluster_probabilities(object)
22. │ ├─seqHMM::posterior_probs(x)
23. │ └─seqHMM:::posterior_probs.mhmm(x)
24. │ ├─...[]
25. │ └─data.table:::`[.data.table`(...)
26. └─base::.handleSimpleError(...)
27. └─testthat (local) h(simpleError(msg, call))
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘communities_and_cliques.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘communities_and_cliques.Rmd’
--- re-building ‘complete_tutorial.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘complete_tutorial.Rmd’
--- re-building ‘grouped_sequences.Rmd’ using rmarkdown
Quitting from grouped_sequences.Rmd:74-76 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 6/6 in VECTOR_ELT
---
Backtrace:
▆
1. ├─tna::group_model(engagement_mmm)
2. └─tna:::group_model.mhmm(engagement_mmm)
3. ├─tna:::group_model.default(...)
4. │ └─group %m% seq_len(nrow(x))
5. ├─base::summary(x)
6. └─seqHMM:::summary.mhmm(x)
7. └─seqHMM::posterior_cluster_probabilities(object)
8. ├─seqHMM::posterior_probs(x)
9. └─seqHMM:::posterior_probs.mhmm(x)
10. ├─...[]
11. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'grouped_sequences.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘grouped_sequences.Rmd’
--- re-building ‘prepare_data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘prepare_data.Rmd’
--- re-building ‘tna.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘tna.Rmd’
SUMMARY: processing the following file failed:
‘grouped_sequences.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc