Last updated on 2025-12-07 07:50:45 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bdsmatrix | 2 | 11 | |
| coxme | 1 | 12 | |
| deming | 2 | 11 | |
| survival | 1 | 3 | 9 |
Current CRAN status: NOTE: 2, OK: 11
Version: 1.3-7
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Terry Therneau <therneau.terry@mayo.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Terry",
family = "Therneau",
role = c("aut", "cre"),
email = "therneau.terry@mayo.edu")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 2.2-22
Check: tests
Result: ERROR
Running ‘brfit.R’ [2s/2s]
Running ‘lmekin1.R’ [3s/3s]
Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK
Running ‘lmekin2.R’ [2s/2s]
Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK
Running ‘nest1.R’ [2s/2s]
Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK
Running ‘nest2.R’ [2s/2s]
Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK
Running ‘refine.R’ [2s/2s]
Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK
Running ‘refine1.R’ [2s/2s]
Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK
Running ‘refine2.R’ [2s/2s]
Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK
Running ‘refine3.R’ [2s/2s]
Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK
Running ‘shrink.R’ [2s/2s]
Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK
Running ‘slope1.R’ [8s/9s]
Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK
Running ‘slope2.R’ [3s/3s]
Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK
Running ‘slope3.R’ [3s/3s]
Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK
Running ‘slope4.R’ [6s/7s]
Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK
Running ‘strata1.R’ [2s/2s]
Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK
Running ‘test0.R’ [2s/2s]
Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK
Running ‘test1.R’ [2s/2s]
Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK
Running ‘test2.R’ [2s/2s]
Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK
Running ‘test3.R’ [2s/2s]
Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK
Running ‘test4.R’ [2s/2s]
Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK
Running ‘twoterm.R’ [2s/2s]
Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
Running the tests in ‘tests/brfit.R’ failed.
Complete output:
> library(coxme)
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: 'bdsmatrix'
The following object is masked from 'package:base':
backsolve
> options(na.action=na.omit)
>
> # This data set comes from a family study, where there were doubts about
> # the correctness of the lmekin fit. (Courtesy M deAndrade)
> # It's a good test of several things: there are missing values, and the
> # data is not in family order
> load('brdat.rda')
>
> library(kinship2)
Error in library(kinship2) : there is no package called 'kinship2'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2-22
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘coxme.Rnw’ using Sweave
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
Error: processing vignette 'coxme.Rnw' failed with diagnostics:
chunk 6
Error in library(kinship2) : there is no package called ‘kinship2’
--- failed re-building ‘coxme.Rnw’
--- re-building ‘laplace.Rnw’ using Sweave
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
--- finished re-building ‘laplace.Rnw’
--- re-building ‘lmekin.Rnw’ using Sweave
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
Loading required package: nlme
Loading required package: kinship2
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘kinship2’
Error: processing vignette 'lmekin.Rnw' failed with diagnostics:
chunk 4 (label = gaw)
Error in pedigree(id, father, mother, sex = sex, famid = famid) :
could not find function "pedigree"
--- failed re-building ‘lmekin.Rnw’
--- re-building ‘variance.Rnw’ using Sweave
Loading required package: coxme
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
--- finished re-building ‘variance.Rnw’
SUMMARY: processing the following files failed:
‘coxme.Rnw’ ‘lmekin.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 1.4-1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Terry Therneau <therneau.terry@mayo.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Terry",
family = "Therneau",
role = c("aut", "cre"),
email = "therneau.terry@mayo.edu")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 3.8-3
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-release-windows-x86_64
Version: 3.8-3
Check: installed package size
Result: NOTE
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
doc 5.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64