CRAN Package Check Results for Package sentopics

Last updated on 2026-08-19 09:51:00 CEST.

Check Details

Version: 0.7.7
Check: tests
Result: ERROR Running 'testthat.R' [99s] Running the tests in 'tests/testthat.R' failed. Complete output: > library("testthat") > > # Keep the test suite within CRAN's two-core limit. > data.table::setDTthreads(2) > library("sentopics") > > if (Sys.getenv("R_COVR") != "true") { + test_check("sentopics") + } else { + test_check("sentopics", reporter = default_reporter()) + # test_check("sentopics", reporter = LocationReporter) + } Saving _problems/test-coherence-5.R Saving _problems/test-conversions-13.R Saving _problems/test-conversions-84.R Saving _problems/test-conversions-123.R Saving _problems/test-conversions-194.R Saving _problems/test-generics-5.R 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Saving _problems/test-others-11.R [ FAIL 9 | WARN 11 | SKIP 1 | PASS 264 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-parallel_chains.R:97:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-coherence.R:5:1'): (code run outside of `test_that()`) ───────── Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'colSums': lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. ├─quanteda::dfm_trim(dfm, min_termfreq = 2) at test-coherence.R:5:1 2. ├─quanteda:::dfm_trim.dfm(dfm, min_termfreq = 2) 3. │ ├─quanteda:::trim_features(...) 4. │ ├─quanteda::docfreq(x) 5. │ └─quanteda:::docfreq.dfm(x) 6. │ ├─methods (local) colSums(x > threshold) 7. │ ├─x > threshold 8. │ └─x > threshold 9. │ ├─methods::as(callGeneric(as(e1, "CsparseMatrix"), e2), "CsparseMatrix") 10. │ │ └─methods:::.class1(object) 11. │ ├─methods::callGeneric(as(e1, "CsparseMatrix"), e2) 12. │ │ └─base::eval(call, parent.frame()) 13. │ │ └─base::eval(call, parent.frame()) 14. │ ├─as(e1, "CsparseMatrix") > e2 15. │ └─as(e1, "CsparseMatrix") > e2 16. └─base::.handleSimpleError(...) 17. └─base (local) h(simpleError(msg, call)) ── Error ('test-conversions.R:12:3'): from STM ───────────────────────────────── Error in `makeTopMatrix(prevalence, data)`: lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. └─stm::stm(...) at test-conversions.R:12:3 2. └─stm (local) makeTopMatrix(prevalence, data) ── Error ('test-conversions.R:84:3'): from topicmodels ───────────────────────── Error in `as.dfm(sparseMatrix(i = x$i, j = x$j, x = x$v, dims = dim(x), dimnames = list(docs = rownames(x), features = colnames(x))))`: lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. ├─sentopics::as.LDA(lda, docs = AssociatedPress) at test-conversions.R:84:3 2. └─sentopics:::as.LDA.LDA_Gibbs(lda, docs = AssociatedPress) 3. ├─quanteda::as.tokens(quanteda::as.dfm(docs)) 4. ├─quanteda::as.dfm(docs) 5. └─quanteda:::as.dfm.DocumentTermMatrix(docs) 6. └─quanteda::as.dfm(...) ── Error ('test-conversions.R:122:3'): from seededlda ────────────────────────── Error in `lda(x, k, label, max_iter, auto_iter, alpha, beta, gamma, adjust_alpha, NULL, words, batch_size, verbose)`: lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. ├─seededlda::textmodel_lda(...) at test-conversions.R:122:3 2. └─seededlda:::textmodel_lda.dfm(...) 3. └─seededlda:::lda(...) ── Error ('test-conversions.R:194:3'): from keyATM ───────────────────────────── Error in `as(x, "Matrix")[, j, drop = FALSE]`: lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. ├─sentopics::as.LDA(out, keyATM_docs) at test-conversions.R:194:3 2. └─sentopics:::as.LDA.keyATM_output(out, keyATM_docs) 3. ├─dfm[, vocabulary$vocabulary$word] 4. └─dfm[, vocabulary$vocabulary$word] 5. ├─as(x, "Matrix")[, j, drop = FALSE] 6. └─as(x, "Matrix")[, j, drop = FALSE] ── Error ('test-generics.R:5:1'): (code run outside of `test_that()`) ────────── Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'colSums': lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. ├─quanteda::dfm_trim(dfm, min_termfreq = 2) at test-generics.R:5:1 2. ├─quanteda:::dfm_trim.dfm(dfm, min_termfreq = 2) 3. │ ├─quanteda:::trim_features(...) 4. │ ├─quanteda::docfreq(x) 5. │ └─quanteda:::docfreq.dfm(x) 6. │ ├─methods (local) colSums(x > threshold) 7. │ ├─x > threshold 8. │ └─x > threshold 9. │ ├─methods::as(callGeneric(as(e1, "CsparseMatrix"), e2), "CsparseMatrix") 10. │ │ └─methods:::.class1(object) 11. │ ├─methods::callGeneric(as(e1, "CsparseMatrix"), e2) 12. │ │ └─base::eval(call, parent.frame()) 13. │ │ └─base::eval(call, parent.frame()) 14. │ ├─as(e1, "CsparseMatrix") > e2 15. │ └─as(e1, "CsparseMatrix") > e2 16. └─base::.handleSimpleError(...) 17. └─base (local) h(simpleError(msg, call)) ── Error ('test-others.R:11:3'): compute_PicaultRenault_scores works ─────────── Error in `as(x, "Matrix")[, j, drop = FALSE]`: lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. └─sentopics::compute_PicaultRenault_scores(docs) at test-others.R:11:3 2. ├─dfm[, intersect(colnames(dfm), PicaultRenault$keyword)] 3. └─dfm[, intersect(colnames(dfm), PicaultRenault$keyword)] 4. ├─as(x, "Matrix")[, j, drop = FALSE] 5. └─as(x, "Matrix")[, j, drop = FALSE] ── Error ('test-parallel_chains.R:131:3'): scores & distances works ──────────── Error in `as(x, "Matrix")[, j, drop = FALSE]`: lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-parallel_chains.R:131:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─sentopics::chainsScores(...) 10. └─sentopics:::computeNPMI(x$tokens, window) 11. ├─sentopics:::NPMI(as.matrix(computeFcm(x, window), epsilon = 0)) 12. ├─base::as.matrix(computeFcm(x, window), epsilon = 0) 13. └─sentopics:::computeFcm(x, window) 14. ├─collocationsV[, quanteda::types(x)] 15. └─collocationsV[, quanteda::types(x)] 16. ├─as(x, "Matrix")[, j, drop = FALSE] 17. └─as(x, "Matrix")[, j, drop = FALSE] ── Error ('test-utils.R:22:3'): as.tokens.dfm works ──────────────────────────── Error in ``dimnames<-`(`*tmp*`, value = dn)`: lazy-load database 'D:/temp/2026_08_18_01_50_00_4374/RtmpAXHTKp/RLIBS_a2b475451a33/Matrix/R/Matrix.rdb' is corrupt Backtrace: ▆ 1. ├─testthat::expect_silent(LDA <- LDA(dfm)) at test-utils.R:22:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─sentopics::LDA(dfm) 10. ├─sentopics::as.LDA(...) 11. └─sentopics::sentopicmodel(...) 12. ├─quanteda::as.tokens(x) 13. └─sentopics:::as.tokens.dfm(x) 14. └─base::`colnames<-`(`*tmp*`, value = seq_len(ncol(x))) 15. ├─methods (local) `dimnames<-`(`*tmp*`, value = dn) 16. └─Matrix (local) `dimnames<-`(`*tmp*`, value = dn) [ FAIL 9 | WARN 11 | SKIP 1 | PASS 264 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64