Last updated on 2025-12-21 07:49:35 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| EpiNow2 | 3 | 10 | |
| rbi | 13 | ||
| rbi.helpers | 13 | ||
| socialmixr | 4 | 9 |
Current CRAN status: NOTE: 3, OK: 10
Version: 1.7.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘cmdstanr’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.7.1
Check: installed package size
Result: NOTE
installed size is 147.3Mb
sub-directories of 1Mb or more:
doc 1.5Mb
libs 143.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.7.1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘cmdstanr’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.7.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, OK: 9
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # nolint start
> library(testthat)
> library(socialmixr)
> # nolint end
>
> data.table::setDTthreads(1)
> test_check("socialmixr")
Saving _problems/test-matrix-57.R
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-surveys.r:4:3', 'test-surveys.r:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-matrix.r:57:3'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(survey$participants, , `:=`(sum_weight, nrow(.SD)), by = (dayofweek %in% 1:5), )`: attempt access index 53/53 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-matrix.r:56:1
2. │ └─base::withCallingHandlers(...)
3. └─base::lapply(...)
4. └─socialmixr (local) FUN(X[[i]], ...)
5. ├─base::do.call(contact_matrix, x) at test-matrix.r:57:3
6. └─socialmixr (local) `<fn>`(...)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘socialmixr.Rmd’ using rmarkdown
Quitting from socialmixr.Rmd:199-204 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 53/53 in VECTOR_ELT
---
Backtrace:
▆
1. └─socialmixr::contact_matrix(...)
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'socialmixr.Rmd' failed with diagnostics:
attempt access index 53/53 in VECTOR_ELT
--- failed re-building ‘socialmixr.Rmd’
SUMMARY: processing the following file failed:
‘socialmixr.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # nolint start
> library(testthat)
> library(socialmixr)
> # nolint end
>
> data.table::setDTthreads(1)
> test_check("socialmixr")
Saving _problems/test-matrix-57.R
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-surveys.r:4:3', 'test-surveys.r:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-matrix.r:57:3'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(survey$participants, , `:=`(sum_weight, nrow(.SD)), by = (dayofweek %in% 1:5), )`: attempt access index 53/53 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-matrix.r:56:1
2. │ └─base::withCallingHandlers(...)
3. └─base::lapply(...)
4. └─socialmixr (local) FUN(X[[i]], ...)
5. ├─base::do.call(contact_matrix, x) at test-matrix.r:57:3
6. └─socialmixr (local) `<fn>`(...)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # nolint start
> library(testthat)
> library(socialmixr)
> # nolint end
>
> data.table::setDTthreads(1)
> test_check("socialmixr")
Saving _problems/test-matrix-57.R
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-surveys.r:4:3', 'test-surveys.r:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-matrix.r:57:3'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(survey$participants, , `:=`(sum_weight, nrow(.SD)), by = (dayofweek %in% 1:5), )`: attempt access index 53/53 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-matrix.r:56:1
2. │ └─base::withCallingHandlers(...)
3. └─base::lapply(...)
4. └─socialmixr (local) FUN(X[[i]], ...)
5. ├─base::do.call(contact_matrix, x) at test-matrix.r:57:3
6. └─socialmixr (local) `<fn>`(...)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘socialmixr.Rmd’ using rmarkdown
Quitting from socialmixr.Rmd:199-204 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 53/53 in VECTOR_ELT
---
Backtrace:
▆
1. └─socialmixr::contact_matrix(...)
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'socialmixr.Rmd' failed with diagnostics:
attempt access index 53/53 in VECTOR_ELT
--- failed re-building ‘socialmixr.Rmd’
SUMMARY: processing the following file failed:
‘socialmixr.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # nolint start
> library(testthat)
> library(socialmixr)
> # nolint end
>
> data.table::setDTthreads(1)
> test_check("socialmixr")
Saving _problems/test-matrix-57.R
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-surveys.r:4:3', 'test-surveys.r:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-matrix.r:57:3'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(survey$participants, , `:=`(sum_weight, nrow(.SD)), by = (dayofweek %in% 1:5), )`: attempt access index 53/53 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-matrix.r:56:1
2. │ └─base::withCallingHandlers(...)
3. └─base::lapply(...)
4. └─socialmixr (local) FUN(X[[i]], ...)
5. ├─base::do.call(contact_matrix, x) at test-matrix.r:57:3
6. └─socialmixr (local) `<fn>`(...)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 33 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc