Last updated on 2025-12-07 07:50:42 CET.
| Package | ERROR | WARN | OK |
|---|---|---|---|
| adjustedCurves | 1 | 12 | |
| CareDensity | 1 | 12 | |
| contsurvplot | 1 | 12 | |
| simDAG | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.11.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'pammtools', 'pec', 'riskRegression', 'rmarkdown', 'covr'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.3
Check: examples
Result: ERROR
Running examples in ‘adjustedCurves-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: adjusted_curve_test
> ### Title: Test if there is a difference between two Confounder-Adjusted
> ### Survival Curves or CIFs
> ### Aliases: adjusted_curve_test
>
> ### ** Examples
>
> library(adjustedCurves)
> library(survival)
>
> #### Simple Survival Case with adjusted survival curves ####
>
> # simulate some data as example
> set.seed(42)
> sim_dat <- sim_confounded_surv(n=50, max_t=1.2)
> sim_dat$group <- as.factor(sim_dat$group)
>
> # estimate a cox-regression for the outcome
> cox_mod <- coxph(Surv(time, event) ~ x1 + x2 + x3 + x4 + x5 + x6 + group,
+ data=sim_dat, x=TRUE)
>
> # use it to estimate adjusted survival curves with bootstrapping
> adjsurv <- adjustedsurv(data=sim_dat,
+ variable="group",
+ ev_time="time",
+ event="event",
+ method="direct",
+ outcome_model=cox_mod,
+ conf_int=FALSE,
+ bootstrap=TRUE,
+ n_boot=10) # n_boot should be much higher in reality
Loading required namespace: riskRegression
Failed with error: ‘there is no package called ‘riskRegression’’
Error in loadNamespace(x) : there is no package called ‘riskRegression’
Calls: adjustedsurv ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(adjustedCurves)
>
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
>
> library(testthat)
> library(vdiffr)
> library(survival)
> library(ggplot2)
> library(Matching)
Loading required package: MASS
Attaching package: 'MASS'
The following object is masked from 'package:dplyr':
select
##
## Matching (Version 4.10-15, Build Date: 2024-10-14)
## See https://www.jsekhon.com for additional documentation.
## Please cite software as:
## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching
## Software with Automated Balance Optimization: The Matching package for R.''
## Journal of Statistical Software, 42(7): 1-52.
##
> library(WeightIt)
> library(prodlim)
> library(MASS)
> library(tidyr)
> library(riskRegression)
Error in library(riskRegression) :
there is no package called 'riskRegression'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: WARN: 1, OK: 12
Version: 0.1.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'covr'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.2.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘riskRegression’
Packages suggested but not available for checking:
'pammtools', 'plotly', 'knitr', 'rmarkdown', 'covr'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: WARN: 1, OK: 12
Version: 0.4.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'covr'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc