Last updated on 2025-01-15 12:48:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | 12.17 | 137.39 | 149.56 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 9.75 | 100.00 | 109.75 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 243.75 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 259.61 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.1 | 13.00 | 129.00 | 142.00 | ERROR | |
| r-patched-linux-x86_64 | 2.0.1 | 12.40 | 128.80 | 141.20 | ERROR | |
| r-release-linux-x86_64 | 2.0.1 | 12.71 | 137.16 | 149.87 | OK | |
| r-release-macos-arm64 | 2.0.1 | 68.00 | OK | |||
| r-release-macos-x86_64 | 2.0.1 | 114.00 | OK | |||
| r-release-windows-x86_64 | 2.0.1 | 15.00 | 128.00 | 143.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.0.1 | 76.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.1 | 218.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.1 | 16.00 | 163.00 | 179.00 | ERROR |
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55347 bytes
Input file size = 55497 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467
Output IDAT size = 45467 bytes (9880 bytes decrease)
Output file size = 45545 bytes (9952 bytes = 17.93% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51884 bytes
Input file size = 52034 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075
Output IDAT size = 43075 bytes (8809 bytes decrease)
Output file size = 43153 bytes (8881 bytes = 17.07% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30587 bytes
Input file size = 31481 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28564
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28555
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25747
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165
Output IDAT size = 25165 bytes (5422 bytes decrease)
Output file size = 25243 bytes (6238 bytes = 19.82% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52560 bytes
Input file size = 52710 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044
Output IDAT size = 43044 bytes (9516 bytes decrease)
Output file size = 43122 bytes (9588 bytes = 18.19% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 29088 bytes
Input file size = 29982 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24767
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237
Output IDAT size = 24237 bytes (4851 bytes decrease)
Output file size = 24315 bytes (5667 bytes = 18.90% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building ‘ref-icar-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ref-icar-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55347 bytes
Input file size = 55497 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467
Output IDAT size = 45467 bytes (9880 bytes decrease)
Output file size = 45545 bytes (9952 bytes = 17.93% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51884 bytes
Input file size = 52034 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075
Output IDAT size = 43075 bytes (8809 bytes decrease)
Output file size = 43153 bytes (8881 bytes = 17.07% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30587 bytes
Input file size = 31481 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28564
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28555
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25747
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165
Output IDAT size = 25165 bytes (5422 bytes decrease)
Output file size = 25243 bytes (6238 bytes = 19.82% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52560 bytes
Input file size = 52710 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044
Output IDAT size = 43044 bytes (9516 bytes decrease)
Output file size = 43122 bytes (9588 bytes = 18.19% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 29088 bytes
Input file size = 29982 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24767
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237
Output IDAT size = 24237 bytes (4851 bytes decrease)
Output file size = 24315 bytes (5667 bytes = 18.90% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building ‘ref-icar-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ref-icar-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55460 bytes
Input file size = 55610 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
Output IDAT size = 45499 bytes (9961 bytes decrease)
Output file size = 45577 bytes (10033 bytes = 18.04% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51909 bytes
Input file size = 52059 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
Output IDAT size = 43151 bytes (8758 bytes decrease)
Output file size = 43229 bytes (8830 bytes = 16.96% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30588 bytes
Input file size = 31482 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28560
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28557
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25749
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
Output IDAT size = 25168 bytes (5420 bytes decrease)
Output file size = 25246 bytes (6236 bytes = 19.81% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52647 bytes
Input file size = 52797 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
Output IDAT size = 43077 bytes (9570 bytes decrease)
Output file size = 43155 bytes (9642 bytes = 18.26% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 29088 bytes
Input file size = 29982 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27074
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24769
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
Output IDAT size = 24239 bytes (4849 bytes decrease)
Output file size = 24317 bytes (5665 bytes = 18.89% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building ‘ref-icar-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ref-icar-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55460 bytes
Input file size = 55610 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
Output IDAT size = 45499 bytes (9961 bytes decrease)
Output file size = 45577 bytes (10033 bytes = 18.04% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51909 bytes
Input file size = 52059 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
Output IDAT size = 43151 bytes (8758 bytes decrease)
Output file size = 43229 bytes (8830 bytes = 16.96% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30588 bytes
Input file size = 31482 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28560
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28557
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25749
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
Output IDAT size = 25168 bytes (5420 bytes decrease)
Output file size = 25246 bytes (6236 bytes = 19.81% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52647 bytes
Input file size = 52797 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
Output IDAT size = 43077 bytes (9570 bytes decrease)
Output file size = 43155 bytes (9642 bytes = 18.26% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 29088 bytes
Input file size = 29982 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27074
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24769
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
Output IDAT size = 24239 bytes (4849 bytes decrease)
Output file size = 24317 bytes (5665 bytes = 18.89% decrease)
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building ‘ref-icar-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ref-icar-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'ref-icar-vignette.Rmd' using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building 'ref-icar-vignette.Rmd'
SUMMARY: processing the following file failed:
'ref-icar-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55347 bytes
Input file size = 55497 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467
Output IDAT size = 45467 bytes (9880 bytes decrease)
Output file size = 45545 bytes (9952 bytes = 17.93% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51884 bytes
Input file size = 52034 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075
Output IDAT size = 43075 bytes (8809 bytes decrease)
Output file size = 43153 bytes (8881 bytes = 17.07% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30587 bytes
Input file size = 31481 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28564
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28555
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25747
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165
Output IDAT size = 25165 bytes (5422 bytes decrease)
Output file size = 25243 bytes (6238 bytes = 19.82% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52560 bytes
Input file size = 52710 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044
Output IDAT size = 43044 bytes (9516 bytes decrease)
Output file size = 43122 bytes (9588 bytes = 18.19% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 29088 bytes
Input file size = 29982 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24767
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237
Output IDAT size = 24237 bytes (4851 bytes decrease)
Output file size = 24315 bytes (5667 bytes = 18.90% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building ‘ref-icar-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ref-icar-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64