Last updated on 2026-10-20 01:50:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 97.44 | 379.34 | 476.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 73.61 | 267.90 | 341.51 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 73.00 | 204.23 | 277.23 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 76.00 | 225.71 | 301.71 | ERROR | |
| r-devel-windows-x86_64 | 0.1.2 | 141.00 | 379.00 | 520.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 90.08 | 406.48 | 496.56 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 95.69 | 408.14 | 503.83 | OK | |
| r-release-macos-arm64 | 0.1.2 | 21.00 | 70.00 | 91.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 58.00 | 372.00 | 430.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 142.00 | 299.00 | 441.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.3 | 56.00 | 485.00 | 541.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.2 | 169.00 | 404.00 | 573.00 | OK |
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘rchime-Ex.R’ failed
The error most likely occurred in:
> ### Name: rchime
> ### Title: rchime
> ### Aliases: rchime rchime.strollur rchime.data.frame
>
> ### ** Examples
>
>
> # Let's use a strollur object with 500 sequences
>
> data <- strollur::load_dataset(
+ rchime_example("strollur_multi_sample_small.rds")
+ )
Error in `strollur::load_dataset()`:
! Unable to create 'strollur' object. The table was created with
strollur version 0.1.1, which is not compatible with the current strollur
version: 0.1.2. To fix this use `export_dataset()` to export a data.frame
version of your strollur object, and import_dataset() to create an updated
strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds"))
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(rchime)
Loading required package: Rcpp
Loading required package: strollur
Attaching package: 'strollur'
The following objects are masked from 'package:base':
assign, names, summary
>
> test_check("rchime")
> rchime removed `12` chimeras from your dataset.
> It took `2.03497838973999` seconds to detect and remove the chimeras.
Saving _problems/test-rchime_strollur-6.R
Saving _problems/test-rchime_strollur-67.R
Saving _problems/test-rchime_strollur-155.R
Saving _problems/test-rchime_strollur-170.R
Saving _problems/test-rchime_strollur-275.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 138 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-rchime_strollur.R:4:3'): test rchime - errors and rchime_options ──
Error in `strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds")) at test-rchime_strollur.R:4:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:67:3'): test rchime by reference - strollur ──
Error in `strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds")) at test-rchime_strollur.R:67:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:153:3'): test rchime de novo - strollur - single sample ──
Error in `strollur::load_dataset(rchime_example("strollur_single_sample.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_single_sample.rds")) at test-rchime_strollur.R:153:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:168:3'): test rchime de novo -strollur/mulitple samples, dereplicate TRUE ──
Error in `strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds")) at test-rchime_strollur.R:168:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:273:3'): test rchime de novo strollur/mulitple samples, dereplicate FALSE ──
Error in `strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds")) at test-rchime_strollur.R:273:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 138 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [27s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(rchime)
Loading required package: Rcpp
Loading required package: strollur
Attaching package: 'strollur'
The following objects are masked from 'package:base':
assign, names, summary
>
> test_check("rchime")
> rchime removed `12` chimeras from your dataset.
> It took `2.33556294441223` seconds to detect and remove the chimeras.
Saving _problems/test-rchime_strollur-6.R
Saving _problems/test-rchime_strollur-67.R
Saving _problems/test-rchime_strollur-155.R
Saving _problems/test-rchime_strollur-170.R
Saving _problems/test-rchime_strollur-275.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 138 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-rchime_strollur.R:4:3'): test rchime - errors and rchime_options ──
Error in `strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds")) at test-rchime_strollur.R:4:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:67:3'): test rchime by reference - strollur ──
Error in `strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_miseq_tiny.rds")) at test-rchime_strollur.R:67:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:153:3'): test rchime de novo - strollur - single sample ──
Error in `strollur::load_dataset(rchime_example("strollur_single_sample.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_single_sample.rds")) at test-rchime_strollur.R:153:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:168:3'): test rchime de novo -strollur/mulitple samples, dereplicate TRUE ──
Error in `strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds")) at test-rchime_strollur.R:168:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
── Error ('test-rchime_strollur.R:273:3'): test rchime de novo strollur/mulitple samples, dereplicate FALSE ──
Error in `strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds"))`: Unable to create 'strollur' object. The table was created with strollur version 0.1.1, which is not compatible with the current strollur version: 0.1.2. To fix this use `export_dataset()` to export a data.frame version of your strollur object, and import_dataset() to create an updated strollur object.
Backtrace:
▆
1. └─strollur::load_dataset(rchime_example("strollur_multi_sample_small.rds")) at test-rchime_strollur.R:273:3
2. └─cli::cli_abort(message)
3. └─rlang::abort(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 138 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc