Last updated on 2024-10-06 12:49:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.12.1 | 55.55 | 363.16 | 418.71 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.12.1 | 37.44 | 224.94 | 262.38 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.12.1 | 699.91 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.12.1 | 740.38 | OK | |||
| r-devel-windows-x86_64 | 2.12.1 | 60.00 | 365.00 | 425.00 | NOTE | |
| r-patched-linux-x86_64 | 2.12.1 | 55.30 | 343.08 | 398.38 | OK | |
| r-release-linux-x86_64 | 2.12.1 | 57.67 | 355.10 | 412.77 | OK | |
| r-release-macos-arm64 | 2.12.1 | 182.00 | NOTE | |||
| r-release-macos-x86_64 | 2.12.1 | 368.00 | NOTE | |||
| r-release-windows-x86_64 | 2.12.1 | 61.00 | 373.00 | 434.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.12.1 | 254.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.12.1 | 346.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.12.1 | 71.00 | 462.00 | 533.00 | NOTE |
Version: 2.12.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘AdvancedFeatures.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/AdvancedFeatures_files/figure-html/plot_codon-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12010 bytes
Input file size = 12100 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10399
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10399
Output IDAT size = 10399 bytes (1611 bytes decrease)
Output file size = 10477 bytes (1623 bytes = 13.41% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/AdvancedFeatures_files/figure-html/plot_codon-2.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12585 bytes
Input file size = 12675 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10861
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10861
Output IDAT size = 10861 bytes (1724 bytes decrease)
Output file size = 10939 bytes (1736 bytes = 13.70% decrease)
--- finished re-building ‘AdvancedFeatures.Rmd’
--- re-building ‘Ancestral.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Ancestral_files/figure-html/seqLogo-1.png
576x384 pixels, 8 bits/pixel, 242 colors in palette
Input IDAT size = 6538 bytes
Input file size = 7354 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5107
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5087
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5087
Output IDAT size = 5087 bytes (1451 bytes decrease)
Output file size = 5903 bytes (1451 bytes = 19.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Ancestral_files/figure-html/MPR-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31232 bytes
Input file size = 31346 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25338
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25338
Output IDAT size = 25338 bytes (5894 bytes decrease)
Output file size = 25416 bytes (5930 bytes = 18.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Ancestral_files/figure-html/plotML-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30026 bytes
Input file size = 30140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24192
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24192
Output IDAT size = 24192 bytes (5834 bytes decrease)
Output file size = 24270 bytes (5870 bytes = 19.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Ancestral_files/figure-html/SYM_reconstruction-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54620 bytes
Input file size = 54770 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42445
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42445
Output IDAT size = 42445 bytes (12175 bytes decrease)
Output file size = 42523 bytes (12247 bytes = 22.36% decrease)
--- finished re-building ‘Ancestral.Rmd’
--- re-building ‘IntertwiningTreesAndNetworks.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-4-1.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 25362 bytes
Input file size = 26256 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23473
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22476
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22476
Output IDAT size = 22476 bytes (2886 bytes decrease)
Output file size = 22554 bytes (3702 bytes = 14.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-4-2.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18236 bytes
Input file size = 19118 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16887
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16520
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16520
Output IDAT size = 16520 bytes (1716 bytes decrease)
Output file size = 16598 bytes (2520 bytes = 13.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-5-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48391 bytes
Input file size = 48529 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41071
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41071
Output IDAT size = 41071 bytes (7320 bytes decrease)
Output file size = 41149 bytes (7380 bytes = 15.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-6-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43858 bytes
Input file size = 43996 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38100
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38100
Output IDAT size = 38100 bytes (5758 bytes decrease)
Output file size = 38178 bytes (5818 bytes = 13.22% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-8-1.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 23039 bytes
Input file size = 23921 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21678
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 21384
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 21384
Output IDAT size = 21384 bytes (1655 bytes decrease)
Output file size = 21462 bytes (2459 bytes = 10.28% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-9-1.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 19483 bytes
Input file size = 20365 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18217
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17688
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17688
Output IDAT size = 17688 bytes (1795 bytes decrease)
Output file size = 17766 bytes (2599 bytes = 12.76% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-9-2.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21561 bytes
Input file size = 22443 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20176
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19896
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19896
Output IDAT size = 19896 bytes (1665 bytes decrease)
Output file size = 19974 bytes (2469 bytes = 11.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-9-3.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53734 bytes
Input file size = 53884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45611
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45611
Output IDAT size = 45611 bytes (8123 bytes decrease)
Output file size = 45689 bytes (8195 bytes = 15.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-10-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25614 bytes
Input file size = 25728 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21099
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21099
Output IDAT size = 21099 bytes (4515 bytes decrease)
Output file size = 21177 bytes (4551 bytes = 17.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-12-1.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 12643 bytes
Input file size = 13513 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11094
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10871
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10871
Output IDAT size = 10871 bytes (1772 bytes decrease)
Output file size = 10949 bytes (2564 bytes = 18.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/IntertwiningTreesAndNetworks_files/figure-html/unnamed-chunk-13-1.png
576x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18720 bytes
Input file size = 19602 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17354
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17015
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17015
Output IDAT size = 17015 bytes (1705 bytes decrease)
Output file size = 17093 bytes (2509 bytes = 12.80% decrease)
--- finished re-building ‘IntertwiningTreesAndNetworks.Rmd’
--- re-building ‘MLbyHand.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/MLbyHand_files/figure-html/plotBS-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10810 bytes
Input file size = 11680 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9596
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9278
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9278
Output IDAT size = 9278 bytes (1532 bytes decrease)
Output file size = 9356 bytes (2324 bytes = 19.90% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/MLbyHand_files/figure-html/ConsensusNet-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18008 bytes
Input file size = 18890 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16784
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16220
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16220
Output IDAT size = 16220 bytes (1788 bytes decrease)
Output file size = 16298 bytes (2592 bytes = 13.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/MLbyHand_files/figure-html/allTrees-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 22151 bytes
Input file size = 23033 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20769
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20719
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20719
Output IDAT size = 20719 bytes (1432 bytes decrease)
Output file size = 20797 bytes (2236 bytes = 9.71% decrease)
--- finished re-building ‘MLbyHand.Rmd’
--- re-building ‘Morphological.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Morphological_files/figure-html/plot_cons_tree-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9344 bytes
Input file size = 10214 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8666
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8434
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8434
Output IDAT size = 8434 bytes (910 bytes decrease)
Output file size = 8512 bytes (1702 bytes = 16.66% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Morphological_files/figure-html/plot_cons_tree-2.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9475 bytes
Input file size = 10345 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8858
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8658
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8658
Output IDAT size = 8658 bytes (817 bytes decrease)
Output file size = 8736 bytes (1609 bytes = 15.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Morphological_files/figure-html/plot_cons_tree-3.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9265 bytes
Input file size = 10135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8646
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8448
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8448
Output IDAT size = 8448 bytes (817 bytes decrease)
Output file size = 8526 bytes (1609 bytes = 15.88% decrease)
--- finished re-building ‘Morphological.Rmd’
--- re-building ‘Networx.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Networx_files/figure-html/unnamed-chunk-2-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3959 bytes
Input file size = 4814 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3439
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3329
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3329
Output IDAT size = 3329 bytes (630 bytes decrease)
Output file size = 3407 bytes (1407 bytes = 29.23% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Networx_files/figure-html/unnamed-chunk-2-2.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5614 bytes
Input file size = 6472 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5088
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4968
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4968
Output IDAT size = 4968 bytes (646 bytes decrease)
Output file size = 5046 bytes (1426 bytes = 22.03% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Networx_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4214 bytes
Input file size = 5072 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3656
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3570
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3570
Output IDAT size = 3570 bytes (644 bytes decrease)
Output file size = 3648 bytes (1424 bytes = 28.08% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Networx_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5045 bytes
Input file size = 5903 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4457
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4356
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4356
Output IDAT size = 4356 bytes (689 bytes decrease)
Output file size = 4434 bytes (1469 bytes = 24.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Networx_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4264 bytes
Input file size = 5119 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3648
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3523
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3523
Output IDAT size = 3523 bytes (741 bytes decrease)
Output file size = 3601 bytes (1518 bytes = 29.65% decrease)
--- finished re-building ‘Networx.Rmd’
--- re-building ‘Trees.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Trees_files/figure-html/plot1-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11413 bytes
Input file size = 12283 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10240
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9904
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9904
Output IDAT size = 9904 bytes (1509 bytes decrease)
Output file size = 9982 bytes (2301 bytes = 18.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phangorn.Rcheck/vign_test/phangorn/vignettes/Trees_files/figure-html/plot2-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13771 bytes
Input file size = 14641 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12542
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12356
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12356
Output IDAT size = 12356 bytes (1415 bytes decrease)
Output file size = 12434 bytes (2207 bytes = 15.07% decrease)
Quitting from lines 64-66 [bootstrap_dist] (Trees.Rmd)
Error: processing vignette 'Trees.Rmd' failed with diagnostics:
NA/NaN/Inf in foreign function call (arg 10)
--- failed re-building ‘Trees.Rmd’
SUMMARY: processing the following file failed:
‘Trees.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.12.1
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
doc 1.4Mb
libs 1.2Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64