CRAN Package Check Results for Package mlr3pipelines

Last updated on 2026-03-17 07:51:53 CET.

Check Details

Version: 0.11.0
Check: examples
Result: ERROR Running examples in ‘mlr3pipelines-Ex.R’ failed The error most likely occurred in: > ### Name: mlr_pipeops_nmf > ### Title: Non-negative Matrix Factorization > ### Aliases: mlr_pipeops_nmf PipeOpNMF > > ### ** Examples > > ## Don't show: > if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf + ## End(Don't show) + ## Don't show: + # NMF attaches these packages to search path on load, #929 + lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE) + ## End(Don't show) + library("mlr3") + + task = tsk("iris") + pop = po("nmf") + + task$data() + pop$train(list(task))[[1]]$data() + + pop$state + ## Don't show: + # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112 + # Necessary as detaching packages does not remove registered S3 methods + suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE)) + ## End(Don't show) + ## Don't show: + }) # examplesIf > lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), + detach, character.only = TRUE) Error in FUN(X[[i]], ...) : invalid 'name' argument Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.11.0
Check: tests
Result: ERROR Running ‘testthat.R’ [87s/43s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-03-17 18:10:40.002911: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.003146: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.006449: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.012687: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.033212: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.03335: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.035868: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.042117: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.04899: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.049154: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.053867: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.070037: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.070448: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.076223: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.076358: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.0804: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.093924: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.094243: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.113709: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.113831: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.118144: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.152257: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.160735: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.160907: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.173768: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.252723: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.253817: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.287763: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.287888: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.290009: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.296151: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.304005: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.304188: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.314148: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.329601: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.330014: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.362481: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.362606: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.364716: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.370293: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.382315: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.382532: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.386782: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.401479: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.401844: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.421148: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.421266: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.42372: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.429851: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.448148: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.448424: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.45309: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.469048: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.469459: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.486767: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.486882: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.489116: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.494702: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.50668: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.506923: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.511773: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.526654: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.527091: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.545747: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.545884: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.553509: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.55984: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.572971: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-17 18:10:40.573125: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.577134: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.591734: embedding > test_pipeop_isomap.R: 2026-03-17 18:10:40.592076: DONE > test_pipeop_isomap.R: 2026-03-17 18:10:40.611386: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.61149: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.613477: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.618822: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.637256: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.637407: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.639786: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.645851: Classical Scaling > test_pipeop_isomap.R: 2026-03-17 18:10:40.658435: Isomap START > test_pipeop_isomap.R: 2026-03-17 18:10:40.658548: constructing knn graph > test_pipeop_isomap.R: 2026-03-17 18:10:40.660634: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-17 18:10:40.666673: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] ══ Skipped tests (128) ═════════════════════════════════════════════════════════ • On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_doublearrow.R:2:1', 'test_gunion.R:2:1', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.11.0
Check: tests
Result: ERROR Running ‘testthat.R’ [255s/192s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] > test_pipeop_blsmote.R: "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-03-13 08:43:28.845461: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:28.847543: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:28.866292: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:28.890754: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:28.987498: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:28.987793: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:28.995154: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:29.02112: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:29.052873: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:29.053317: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:29.095102: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:29.160894: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:29.162073: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:29.19258: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:29.207831: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:29.222445: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:29.286114: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:29.287249: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:29.409491: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:29.409779: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:29.429304: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:29.629921: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:29.769934: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:29.770641: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:29.819393: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:30.161567: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:30.1682: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:30.371411: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:30.371706: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:30.382024: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:30.42317: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:30.459586: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:30.459993: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:30.489653: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:30.553643: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:30.555385: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:30.755344: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:30.755644: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:30.762712: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:30.788356: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:30.858403: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:30.85883: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:30.879139: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:30.942353: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:30.943436: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:31.042325: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:31.042616: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:31.056509: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:31.07937: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:31.140213: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:31.140655: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:31.163161: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:31.232714: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:31.238185: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:31.341341: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:31.341646: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:31.348909: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:31.380123: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:31.438914: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:31.439337: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:31.490663: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:31.554852: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:31.556156: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:31.659012: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:31.659317: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:31.674822: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:31.706254: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:31.765521: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 08:43:31.765948: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:31.788062: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:31.856373: embedding > test_pipeop_isomap.R: 2026-03-13 08:43:31.857542: DONE > test_pipeop_isomap.R: 2026-03-13 08:43:31.953006: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:31.953303: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:31.965388: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:31.988951: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:32.100432: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:32.100712: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:32.114565: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:32.143142: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 08:43:32.178065: Isomap START > test_pipeop_isomap.R: 2026-03-13 08:43:32.178372: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 08:43:32.205445: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 08:43:32.246025: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] ══ Skipped tests (128) ═════════════════════════════════════════════════════════ • On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_doublearrow.R:2:1', 'test_gunion.R:2:1', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1', 'test_pipeop_smote.R:10:3', 'test_pipeop_splines.R:3:1', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64

Version: 0.11.0
Check: tests
Result: ERROR Running 'testthat.R' [238s] Running the tests in 'tests/testthat.R' failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_multiplicities.R: > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-03-13 01:22:31.450178: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:31.450876: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:31.963658: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:31.987071: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:32.061608: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:32.062266: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:32.073168: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:32.093953: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:32.139262: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:32.140229: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:32.161403: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:32.210698: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:32.21258: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:32.255898: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:32.256609: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:32.27724: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:32.325705: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:32.32749: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:32.433552: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:32.43405: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:32.456645: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:32.568453: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:32.605671: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:32.606353: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:32.648911: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:32.871776: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:32.877129: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:33.106473: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:33.107148: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:33.118677: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:33.140889: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:33.196231: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:33.197201: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:33.22099: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:33.270184: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:33.272151: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:33.446813: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:33.447279: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:33.455773: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:33.470958: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:33.523022: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:33.523691: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:33.540185: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:33.577229: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:33.579165: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:33.728294: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:33.728975: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:33.739766: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:33.757626: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:33.821292: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:33.822174: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:33.843134: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:33.879956: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:33.881467: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:34.002403: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:34.00309: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:34.015878: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:34.038448: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:34.113593: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:34.114481: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:34.133661: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:34.182212: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:34.184182: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:34.302927: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:34.303578: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:34.314069: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:34.33605: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:34.415063: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-13 01:22:34.416005: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:34.455426: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:34.506201: embedding > test_pipeop_isomap.R: 2026-03-13 01:22:34.507943: DONE > test_pipeop_isomap.R: 2026-03-13 01:22:34.6508: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:34.651465: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:34.662516: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:34.685083: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:34.811109: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:34.811743: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:34.824345: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:34.846937: Classical Scaling > test_pipeop_isomap.R: 2026-03-13 01:22:34.886043: Isomap START > test_pipeop_isomap.R: 2026-03-13 01:22:34.886732: constructing knn graph > test_pipeop_isomap.R: 2026-03-13 01:22:34.899138: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-13 01:22:34.921698: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] ══ Skipped tests (128) ═════════════════════════════════════════════════════════ • On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_doublearrow.R:2:1', 'test_gunion.R:2:1', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1', 'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_ppl.R:63:3', 'test_typecheck.R:188:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64