CRAN Package Check Results for Maintainer ‘Michal Juraska <mjuraska at fredhutch.org>’

Last updated on 2025-12-07 07:50:38 CET.

Package ERROR WARN NOTE OK
CoRpower 1 3 9
futility 1 8 4
pssmooth 5 8
seqDesign 1 12
sievePH 13
speff2trial 2 11

Package CoRpower

Current CRAN status: WARN: 1, NOTE: 3, OK: 9

Version: 1.0.4
Check: package dependencies
Result: WARN Cannot process vignettes Packages suggested but not available for checking: 'knitr', 'rmarkdown' VignetteBuilder package required for checking but not installed: ‘knitr’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.4
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.4
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package futility

Current CRAN status: ERROR: 1, NOTE: 8, OK: 4

Version: 0.4
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘completeTrial_byArm_eventPriorRateC3=0.001_eventPriorRateT1=0_eventPriorRateT2=0_eventPriorWt=0.5.RData’ ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.2.RData’ ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.4.RData’ ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.6.RData’ ‘completeTrial_pooled_eventPriorRate=0.001_eventPriorWt=0.5.RData’ ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.2.RData’ ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.4.RData’ ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.6.RData’ ‘rcdf_byArm_arm=T1_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03.pdf’ ‘rcdf_pooled_eventPriorRate=0.06.pdf’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.4
Check: package dependencies
Result: ERROR Packages suggested but not available for checking: 'knitr', 'rmarkdown' VignetteBuilder package required for checking but not installed: ‘knitr’ Files named as vignettes but with no recognized vignette engine: ‘inst/doc/bayesianIncidenceRateModel.Rnw’ (Is a VignetteBuilder field missing?) See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package pssmooth

Current CRAN status: NOTE: 5, OK: 8

Version: 1.0.3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following URLs which should use \doi (with the DOI name only): File ‘riskCurve.Rd’: https://doi.org/10.1093/biostatistics/kxy074 File ‘summary.riskCurve.Rd’: https://doi.org/10.1093/biostatistics/kxy074 File ‘testConstancy.Rd’: https://doi.org/10.1093/biostatistics/kxy074 File ‘testEquality.Rd’: https://doi.org/10.1093/biostatistics/kxy074 Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.3
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package seqDesign

Current CRAN status: ERROR: 1, OK: 12

Version: 1.2
Check: package dependencies
Result: ERROR Package suggested but not available for checking: ‘knitr’ VignetteBuilder package required for checking but not installed: ‘knitr’ Files named as vignettes but with no recognized vignette engine: ‘inst/doc/seqDesignInstructions.Rnw’ (Is a VignetteBuilder field missing?) See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Package sievePH

Current CRAN status: OK: 13

Package speff2trial

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Michal", family = "Juraska", role = c("aut", "cre"), email = "mjuraska@fredhutch.org"), person(given = c("with", "contributions", "from", "Peter", "B."), family = "Gilbert", role = "aut", email = "pgilbert@scharp.org"), person(given = "Xiaomin", family = "Lu", role = "aut", email = "xlu2@phhp.ufl.edu"), person(given = "Min", family = "Zhang", role = "aut", email = "mzhangst@umich.edu"), person(given = "Marie", family = "Davidian", role = "aut", email = "davidian@stat.ncsu.edu"), person(given = c("Anastasios", "A."), family = "Tsiatis", role = "aut", email = "tsiatis@stat.ncsu.edu")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc