CRAN Package Check Results for Package mets

Last updated on 2026-07-01 06:02:09 CEST.

Check Details

Version: 1.3.10
Check: examples
Result: ERROR Running examples in ‘mets-Ex.R’ failed The error most likely occurred in: > ### Name: test_marginalMean > ### Title: Pepe-Mori Test for Marginal Mean Comparison > ### Aliases: test_marginalMean > > ### ** Examples > > data(bmt,package="mets") > bmt$time <- bmt$time+runif(nrow(bmt))*0.01 > bmt$id <- 1:nrow(bmt) > dcut(bmt) <- age.f~age > > fg=cifregFG(Event(time,cause)~tcell,data=bmt,cause=1) > > ## computing tests for difference for CIF > pmt <- test_marginalMean(Event(time,cause)~strata(tcell)+cluster(id),data=bmt,cause=1, + death.code=1:2,death.code.prop=2,cens.code=0,time=40) Warning in check_ic_mean_zero(ic_theta) : IC does not have mean zero (max |mean|/rms = 0.11). Using lava.options(check.ic = FALSE) disables the warning globally. Warning in estimate.default(NULL, ...) : The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead. Warning in estimate.default(pepe.mori, null = 0) : The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead. Warning in estimate.default(b, ...) : The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead. > summary(pmt) Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent Calls: summary -> summary.marginalTest -> rownames<- Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.10
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘basic-dutils.Rmd’ using rmarkdown --- finished re-building ‘basic-dutils.Rmd’ --- re-building ‘binomial-family.Rmd’ using rmarkdown --- finished re-building ‘binomial-family.Rmd’ --- re-building ‘binomial-twin.Rmd’ using rmarkdown --- finished re-building ‘binomial-twin.Rmd’ --- re-building ‘binreg-TRS.Rmd’ using rmarkdown --- finished re-building ‘binreg-TRS.Rmd’ --- re-building ‘binreg-ate.Rmd’ using rmarkdown --- finished re-building ‘binreg-ate.Rmd’ --- re-building ‘binreg.Rmd’ using rmarkdown --- finished re-building ‘binreg.Rmd’ --- re-building ‘cifreg.Rmd’ using rmarkdown --- finished re-building ‘cifreg.Rmd’ --- re-building ‘cooking-survival-data.Rmd’ using rmarkdown --- finished re-building ‘cooking-survival-data.Rmd’ --- re-building ‘cumulative-cost.Rmd’ using rmarkdown --- finished re-building ‘cumulative-cost.Rmd’ --- re-building ‘glm-utility.Rmd’ using rmarkdown --- finished re-building ‘glm-utility.Rmd’ --- re-building ‘haplo-discrete-ttp.Rmd’ using rmarkdown --- finished re-building ‘haplo-discrete-ttp.Rmd’ --- re-building ‘interval-discrete-survival.Rmd’ using rmarkdown --- finished re-building ‘interval-discrete-survival.Rmd’ --- re-building ‘marginal-cox.Rmd’ using rmarkdown --- finished re-building ‘marginal-cox.Rmd’ --- re-building ‘mediation-survival.Rmd’ using rmarkdown --- finished re-building ‘mediation-survival.Rmd’ --- re-building ‘phreg_rct.Rmd’ using rmarkdown --- finished re-building ‘phreg_rct.Rmd’ --- re-building ‘quantitative-twin.Rmd’ using rmarkdown --- finished re-building ‘quantitative-twin.Rmd’ --- re-building ‘recurrent-events.Rmd’ using rmarkdown Quitting from recurrent-events.Rmd:281-289 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `dimnames(x) <- dn`: ! length of 'dimnames' [1] not equal to array extent --- Backtrace: ▆ 1. ├─base::withVisible(knit_print(x, ...)) 2. ├─knitr::knit_print(x, ...) 3. └─knitr:::knit_print.default(x, ...) 4. └─knitr::normal_print(x) 5. ├─base::print(x) 6. └─mets:::print.marginalTest(x) 7. ├─base::print(summary(x), ...) 8. ├─base::summary(x) 9. └─mets:::summary.marginalTest(x) 10. └─base::`rownames<-`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'recurrent-events.Rmd' failed with diagnostics: length of 'dimnames' [1] not equal to array extent --- failed re-building ‘recurrent-events.Rmd’ --- re-building ‘rmst-ate.Rmd’ using rmarkdown --- finished re-building ‘rmst-ate.Rmd’ --- re-building ‘survival-ate.Rmd’ using rmarkdown --- finished re-building ‘survival-ate.Rmd’ --- re-building ‘time-to-event-family-studies-arev.Rmd’ using rmarkdown --- finished re-building ‘time-to-event-family-studies-arev.Rmd’ --- re-building ‘twostage-survival.Rmd’ using rmarkdown --- finished re-building ‘twostage-survival.Rmd’ --- re-building ‘while-alive.Rmd’ using rmarkdown --- finished re-building ‘while-alive.Rmd’ SUMMARY: processing the following file failed: ‘recurrent-events.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc