Last updated on 2026-02-04 07:50:55 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CohortCharacteristics | 1 | 2 | 10 |
| DrugUtilisation | 13 | ||
| OmopConstructor | 3 | 10 | |
| omopgenerics | 13 | ||
| OmopViewer | 7 | 6 | |
| PatientProfiles | 1 | 12 |
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 1.1.1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 3.6Mb
help 1.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.1
Check: for code/documentation mismatches
Result: WARN
Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd':
mockCohortCharacteristics
Code: function(con = NULL, writeSchema = NULL, numberIndividuals =
10, ..., seed = NULL)
Docs: function(numberIndividuals = 10, ..., source = "local", con =
lifecycle::deprecated(), writeSchema =
lifecycle::deprecated(), seed =
lifecycle::deprecated())
Argument names in docs not in code:
source
Mismatches in argument names (first 3):
Position: 1 Code: con Docs: numberIndividuals
Position: 2 Code: writeSchema Docs: ...
Position: 3 Code: numberIndividuals Docs: source
Mismatches in argument default values:
Name: 'con' Code: NULL Docs: lifecycle::deprecated()
Name: 'writeSchema' Code: NULL Docs: lifecycle::deprecated()
Name: 'seed' Code: NULL Docs: lifecycle::deprecated()
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘summarise_characteristics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_characteristics.Rmd:24-49 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::filter_impl(...)
7. │ │ └─dplyr:::dplyr_quosures(...)
8. │ │ └─rlang::quos(..., .ignore_empty = "all")
9. │ └─base::colnames(x)
10. │ └─base::is.data.frame(x)
11. └─base::loadNamespace(x)
12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
13. └─base (local) withOneRestart(expr, restarts[[1L]])
14. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_characteristics.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘summarise_characteristics.Rmd’
--- re-building ‘summarise_cohort_overlap.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_cohort_overlap.Rmd:27-57 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::filter_impl(...)
7. │ │ └─dplyr:::dplyr_quosures(...)
8. │ │ └─rlang::quos(..., .ignore_empty = "all")
9. │ └─base::colnames(x)
10. │ └─base::is.data.frame(x)
11. └─base::loadNamespace(x)
12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
13. └─base (local) withOneRestart(expr, restarts[[1L]])
14. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_cohort_overlap.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘summarise_cohort_overlap.Rmd’
--- re-building ‘summarise_cohort_timing.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_cohort_timing.Rmd:25-55 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::filter_impl(...)
7. │ │ └─dplyr:::dplyr_quosures(...)
8. │ │ └─rlang::quos(..., .ignore_empty = "all")
9. │ └─base::colnames(x)
10. │ └─base::is.data.frame(x)
11. └─base::loadNamespace(x)
12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
13. └─base (local) withOneRestart(expr, restarts[[1L]])
14. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_cohort_timing.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘summarise_cohort_timing.Rmd’
--- re-building ‘summarise_large_scale_characteristics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_large_scale_characteristics.Rmd:31-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::filter_impl(...)
7. │ │ └─dplyr:::dplyr_quosures(...)
8. │ │ └─rlang::quos(..., .ignore_empty = "all")
9. │ └─base::colnames(x)
10. │ └─base::is.data.frame(x)
11. └─base::loadNamespace(x)
12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
13. └─base (local) withOneRestart(expr, restarts[[1L]])
14. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_large_scale_characteristics.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘summarise_large_scale_characteristics.Rmd’
SUMMARY: processing the following files failed:
‘summarise_characteristics.Rmd’ ‘summarise_cohort_overlap.Rmd’
‘summarise_cohort_timing.Rmd’
‘summarise_large_scale_characteristics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 3, OK: 10
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘buildObservationPeriod.Rmd’ using rmarkdown
Quitting from buildObservationPeriod.Rmd:371-377 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (x$plot_header_text_bold) ...`:
! argument is of length zero
---
Backtrace:
▆
1. └─OmopSketch::plotObservationPeriod(...)
2. └─visOmopResults::scatterPlot(...)
3. └─visOmopResults:::validateStyle(style = style, obj = "plot", type = type)
4. └─visOmopResults:::formatPlotStyle(x = internalStyle, fontsizeRef = fontsizeRef)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'buildObservationPeriod.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘buildObservationPeriod.Rmd’
SUMMARY: processing the following file failed:
‘buildObservationPeriod.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘buildObservationPeriod.Rmd’ using rmarkdown
Quitting from buildObservationPeriod.Rmd:371-377 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (x$plot_header_text_bold) ...`:
! argument is of length zero
---
Backtrace:
▆
1. └─OmopSketch::plotObservationPeriod(...)
2. └─visOmopResults::scatterPlot(...)
3. └─visOmopResults:::validateStyle(style = style, obj = "plot", type = type)
4. └─visOmopResults:::formatPlotStyle(x = internalStyle, fontsizeRef = fontsizeRef)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'buildObservationPeriod.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘buildObservationPeriod.Rmd’
SUMMARY: processing the following file failed:
‘buildObservationPeriod.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 7, OK: 6
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [38s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-appStatic.R: i Processing data
> test-background.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpQ826Am/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpxBY7Lk/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpQ826Am/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpxBY7Lk/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpQ826Am/shiny
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpxBY7Lk/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpxBY7Lk/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpxBY7Lk/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpxBY7Lk/shiny
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpxBY7Lk/shiny
Saving _problems/test-appStatic-186.R
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
'test-appStatic.R:37:1', 'test-appStatic.R:51:1', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `brand_resolve(brand)`: The package "brand.yml" is required.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib:::brand_resolve(brand)
6. └─bslib:::brand_resolve.list(brand)
7. └─rlang::check_installed("brand.yml")
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpvTC2lO/shiny
> test-background.R: v Shiny created in: /tmp/RtmpTYyMMD/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpTYyMMD/shiny
> test-appStatic.R: v Shiny created in: /tmp/RtmpvTC2lO/shiny
> test-background.R: i Processing data
> test-appStatic.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpTYyMMD/shiny
> test-appStatic.R: v Shiny created in: /tmp/RtmpvTC2lO/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpvTC2lO/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpvTC2lO/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpvTC2lO/shiny
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /tmp/RtmpvTC2lO/shiny
Saving _problems/test-appStatic-186.R
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
'test-appStatic.R:37:1', 'test-appStatic.R:51:1', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
Error in `maybe_convert_font_size_to_rem(prop_value)`: Could not convert font size '11' from unknown units to a relative unit.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib::bs_bundle(...)
6. │ ├─base::structure(sass_bundle(theme, ...), class = class(theme))
7. │ └─sass::sass_bundle(theme, ...)
8. │ ├─sass:::dropNulls(list2(...))
9. │ └─rlang::list2(...)
10. └─bslib:::bs_brand_bundle(brand, version = version)
11. └─brand.yml::brand_sass_typography(brand)
12. └─brand.yml:::maybe_convert_font_size_to_rem(prop_value)
13. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [62s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-background.R: i Processing data
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpyqjZTQ/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpyqjZTQ/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpYAdAt1/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpyqjZTQ/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpYAdAt1/shiny
> test-appStatic.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpyqjZTQ/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpyqjZTQ/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpYAdAt1/shiny
> test-appStatic.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpyqjZTQ/shiny
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpxsBbcB/working_dir/RtmpyqjZTQ/shiny
Saving _problems/test-appStatic-186.R
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-summary.R: `package_name` and `package_version` added to settings.
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-appStatic.R:1:1', 'test-appStatic.R:37:1',
'test-appStatic.R:51:1', 'test-appStatic.R:71:3',
'test-packagesSupported.R:2:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
Error in `maybe_convert_font_size_to_rem(prop_value)`: Could not convert font size '11' from unknown units to a relative unit.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib::bs_bundle(...)
6. │ ├─base::structure(sass_bundle(theme, ...), class = class(theme))
7. │ └─sass::sass_bundle(theme, ...)
8. │ ├─sass:::dropNulls(list2(...))
9. │ └─rlang::list2(...)
10. └─bslib:::bs_brand_bundle(brand, version = version)
11. └─brand.yml::brand_sass_typography(brand)
12. └─brand.yml:::maybe_convert_font_size_to_rem(prop_value)
13. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [60s/80s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpWeJdGe/shiny
> test-appStatic.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpTY2UFK/shiny
> test-appStatic.R: i Processing data
> test-background.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpTY2UFK/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpWeJdGe/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpTY2UFK/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpWeJdGe/shiny
> test-appStatic.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpTY2UFK/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpTY2UFK/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpTY2UFK/shiny
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /tmp/RtmpRtB9JD/working_dir/RtmpTY2UFK/shiny
Saving _problems/test-appStatic-186.R
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
'test-appStatic.R:37:1', 'test-appStatic.R:51:1', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
Error in `maybe_convert_font_size_to_rem(prop_value)`: Could not convert font size '11' from unknown units to a relative unit.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib::bs_bundle(...)
6. │ ├─base::structure(sass_bundle(theme, ...), class = class(theme))
7. │ └─sass::sass_bundle(theme, ...)
8. │ ├─sass:::dropNulls(list2(...))
9. │ └─rlang::list2(...)
10. └─bslib:::bs_brand_bundle(brand, version = version)
11. └─brand.yml::brand_sass_typography(brand)
12. └─brand.yml:::maybe_convert_font_size_to_rem(prop_value)
13. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [37s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-appStatic.R: i Processing data
> test-background.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtmp1Ij5jr/shiny
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpD1JwBm/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtmp1Ij5jr/shiny
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpD1JwBm/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtmp1Ij5jr/shiny
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpD1JwBm/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtmp1Ij5jr/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtmp1Ij5jr/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtmp1Ij5jr/shiny
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtmp1Ij5jr/shiny
Saving _problems/test-appStatic-186.R
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
'test-appStatic.R:37:1', 'test-appStatic.R:51:1', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `brand_resolve(brand)`: The package "brand.yml" is required.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib:::brand_resolve(brand)
6. └─bslib:::brand_resolve.list(brand)
7. └─rlang::check_installed("brand.yml")
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [37s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-appStatic.R: i Processing data
> test-background.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpbVvHNl/shiny
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpfvllKC/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpbVvHNl/shiny
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpfvllKC/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpbVvHNl/shiny
> test-background.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpfvllKC/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpbVvHNl/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpbVvHNl/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpbVvHNl/shiny
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/RtmpbVvHNl/shiny
Saving _problems/test-appStatic-186.R
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
'test-appStatic.R:37:1', 'test-appStatic.R:51:1', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `brand_resolve(brand)`: The package "brand.yml" is required.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib:::brand_resolve(brand)
6. └─bslib:::brand_resolve.list(brand)
7. └─rlang::check_installed("brand.yml")
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.6.0
Check: tests
Result: ERROR
Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-background.R: i Processing data
> test-appStatic.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpsbauF8/shiny
> test-background.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpcbARQc/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpsbauF8/shiny
> test-background.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpcbARQc/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpsbauF8/shiny
> test-background.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpcbARQc/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpsbauF8/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpsbauF8/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpsbauF8/shiny
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: D:\temp\2026_02_02_01_50_01_7887\RtmpsbauF8/shiny
Saving _problems/test-appStatic-186.R
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
'test-appStatic.R:37:1', 'test-appStatic.R:51:1', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `brand_resolve(brand)`: The package "brand.yml" is required.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib:::brand_resolve(brand)
6. └─bslib:::brand_resolve.list(brand)
7. └─rlang::check_installed("brand.yml")
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.4.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
--- finished re-building ‘cohort-intersect.Rmd’
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from concept-intersect.Rmd:35-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::filter_impl(...)
7. │ │ └─dplyr:::dplyr_quosures(...)
8. │ │ └─rlang::quos(..., .ignore_empty = "all")
9. │ └─base::colnames(x)
10. │ └─base::is.data.frame(x)
11. └─base::loadNamespace(x)
12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
13. └─base (local) withOneRestart(expr, restarts[[1L]])
14. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘concept-intersect.Rmd’
--- re-building ‘demographics.rmd’ using rmarkdown
--- finished re-building ‘demographics.rmd’
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise.Rmd:78-130 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::filter_impl(...)
7. │ │ └─dplyr:::dplyr_quosures(...)
8. │ │ └─rlang::quos(..., .ignore_empty = "all")
9. │ └─base::colnames(x)
10. │ └─base::is.data.frame(x)
11. └─base::loadNamespace(x)
12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
13. └─base (local) withOneRestart(expr, restarts[[1L]])
14. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘summarise.Rmd’
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from table-intersect.Rmd:34-57 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::filter_impl(...)
7. │ │ └─dplyr:::dplyr_quosures(...)
8. │ │ └─rlang::quos(..., .ignore_empty = "all")
9. │ └─base::colnames(x)
10. │ └─base::is.data.frame(x)
11. └─base::loadNamespace(x)
12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
13. └─base (local) withOneRestart(expr, restarts[[1L]])
14. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'table-intersect.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘table-intersect.Rmd’
SUMMARY: processing the following files failed:
‘concept-intersect.Rmd’ ‘summarise.Rmd’ ‘table-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64