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CRAN Package Check Results for Package lisat

CRAN Package Check Results for Package lisat

Last updated on 2026-07-26 05:50:24 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.2 49.99 591.48 641.47 OK
r-devel-linux-x86_64-debian-gcc 0.1.2 36.82 409.39 446.21 OK
r-devel-linux-x86_64-fedora-clang 0.1.2 88.00 983.29 1071.29 OK
r-devel-linux-x86_64-fedora-gcc 0.1.2 39.00 415.84 454.84 OK
r-devel-windows-x86_64 0.1.2 47.00 465.00 512.00 OK
r-patched-linux-x86_64 0.1.2 45.94 563.79 609.73 OK
r-release-linux-x86_64 0.1.2 49.12 566.15 615.27 OK
r-release-macos-arm64 0.1.2 14.00 146.00 160.00 OK
r-release-macos-x86_64 0.1.2 34.00 562.00 596.00 OK
r-release-windows-x86_64 0.1.2 51.00 460.00 511.00 OK
r-oldrel-macos-arm64 0.1.2 13.00 191.00 204.00 ERROR
r-oldrel-macos-x86_64 0.1.2 38.00 656.00 694.00 ERROR
r-oldrel-windows-x86_64 0.1.2 67.00 668.00 735.00 OK

Check Details

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘lisat-intro.Rmd’ using rmarkdown Quitting from lisat-intro.Rmd:107-111 [cis_analysis] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000) 2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")] 3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name")) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘lisat-intro.Rmd’ SUMMARY: processing the following file failed: ‘lisat-intro.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [12s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64

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