Last updated on 2025-07-01 15:50:21 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| gprofiler2 | 1 | 1 | 11 |
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 0.2.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Liis Kolberg <liis.kolberg@ut.ee>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Liis",
family = "Kolberg",
role = c("aut", "cre"),
email = "liis.kolberg@ut.ee"),
person(given = "Uku",
family = "Raudvere",
role = "aut",
email = "uku.raudvere@ut.ee"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.3
Check: examples
Result: ERROR
Running examples in ‘gprofiler2-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gconvert
> ### Title: Gene ID conversion.
> ### Aliases: gconvert
>
> ### ** Examples
>
> gconvert(c("POU5F1", "SOX2", "NANOG"), organism = "hsapiens", target="AFFY_HG_U133_PLUS_2")
Error in function (type, msg, asError = TRUE) :
Could not resolve host: biit.cs.ut.ee
Calls: gconvert ... gprofiler_request -> <Anonymous> -> <Anonymous> -> fun
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘gprofiler2.Rmd’ using rmarkdown
Quitting from gprofiler2.Rmd:114-122 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Could not resolve host: biit.cs.ut.ee
---
Backtrace:
▆
1. ├─gprofiler2::gost(...)
2. │ └─gprofiler2::get_version_info(organism = organism)
3. │ └─gprofiler2:::gprofiler_request(url, body)
4. │ └─RCurl::curlPerform(...)
5. └─RCurl (local) `<fn>`(6L, "Could not resolve host: biit.cs.ut.ee", TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
Could not resolve host: biit.cs.ut.ee
--- failed re-building ‘gprofiler2.Rmd’
SUMMARY: processing the following file failed:
‘gprofiler2.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc