Last updated on 2025-12-20 08:49:22 CET.
| Package | ERROR | OK |
|---|---|---|
| Rcan | 3 | 10 |
Current CRAN status: ERROR: 3, OK: 10
Version: 1.3.92
Check: examples
Result: ERROR
Running examples in ‘Rcan-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ICD_group_CI5
> ### Title: ICD10 group detailed example
> ### Aliases: ICD_group_CI5
> ### Keywords: datasets
>
> ### ** Examples
>
>
>
> data(ICD_group_CI5)
> data(data_individual_file)
>
> #group individual data by
> # 5 year age group
> # ICd grouping from dataframe ICD_group_CI5
>
> df_data_icd <- csu_group_cases(data_individual_file,
+ var_age="age",
+ group_by=c("sex", "regcode", "reglabel"),
+ df_ICD = ICD_group_CI5,
+ var_ICD ="site")
Warning in csu_group_cases(data_individual_file, var_age = "age", group_by = c("sex", :
Warning:
60 cases have age value > 150 and will be considered as unknown age
Error in `[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data)) :
attempt access index 8/8 in VECTOR_ELT
Calls: csu_group_cases -> core.csu_group_cases -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.92
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
>
> library(testthat)
> test_check("Rcan")
Loading required package: Rcan
Type example(Rcan) to see demo of the function.
Saving _problems/test-Rcan-13.R
Saving _problems/test-Rcan-34.R
Population with less than 18 age group:
registry_label nb_age_group
<fctr> <num>
India, Chennai (Madras) 16
South Australia 17
ASR have been computed for the age group 0-99+
Cumulative risk have been computed for the age group 0-74
ASR have been computed for the age group 0-99+
Saving _problems/test-Rcan-122.R
Population with less than 18 age group:
registry_label year nb_age_group
<fctr> <int> <num>
Brazil, Goiania 1988 17
Brazil, Goiania 1989 17
Brazil, Goiania 1990 17
Brazil, Goiania 1991 17
Brazil, Goiania 1992 17
--- --- ---
USA, Georgia, Atlanta: Black 2003 17
USA, Georgia, Atlanta: Black 2004 17
USA, Georgia, Atlanta: Black 2005 17
USA, Georgia, Atlanta: Black 2006 17
USA, Georgia, Atlanta: Black 2007 17
ASR have been computed for the age group 0-99+
Saving _problems/test-Rcan-149.R
[ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Rcan.R:9:3'): Test csu_group_cases: 1 ──────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_group_cases(...) at test-Rcan.R:9:3
2. └─Rcan:::core.csu_group_cases(...)
3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:29:3'): Test csu_merge_cases_pop: 1 ─────────────────────
Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_group_cases(...) at test-Rcan.R:29:3
2. └─Rcan:::core.csu_group_cases(...)
3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:120:3'): Test trend: 1 ──────────────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(CSU_smooth, loess(CSU_T ~ CSU_Y, span = smoothing)$fitted), by = CSU_BY)`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_time_trend(...) at test-Rcan.R:120:3
2. └─Rcan:::core.csu_time_trend(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:147:3'): Test eapc: 1 ───────────────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(id_group, .GRP), by = group_by)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_eapc(...) at test-Rcan.R:147:3
2. └─Rcan:::core.csu_eapc(...)
3. ├─dt_data[, `:=`(id_group, .GRP), by = group_by]
4. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.92
Check: examples
Result: ERROR
Running examples in ‘Rcan-Ex.R’ failed
The error most likely occurred in:
> ### Name: ICD_group_CI5
> ### Title: ICD10 group detailed example
> ### Aliases: ICD_group_CI5
> ### Keywords: datasets
>
> ### ** Examples
>
>
>
> data(ICD_group_CI5)
> data(data_individual_file)
>
> #group individual data by
> # 5 year age group
> # ICd grouping from dataframe ICD_group_CI5
>
> df_data_icd <- csu_group_cases(data_individual_file,
+ var_age="age",
+ group_by=c("sex", "regcode", "reglabel"),
+ df_ICD = ICD_group_CI5,
+ var_ICD ="site")
Warning in csu_group_cases(data_individual_file, var_age = "age", group_by = c("sex", :
Warning:
60 cases have age value > 150 and will be considered as unknown age
Error in `[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data)) :
attempt access index 8/8 in VECTOR_ELT
Calls: csu_group_cases -> core.csu_group_cases -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3.92
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
>
> library(testthat)
> test_check("Rcan")
Loading required package: Rcan
Type example(Rcan) to see demo of the function.
Saving _problems/test-Rcan-13.R
Saving _problems/test-Rcan-34.R
Population with less than 18 age group:
registry_label nb_age_group
<fctr> <num>
India, Chennai (Madras) 16
South Australia 17
ASR have been computed for the age group 0-99+
Cumulative risk have been computed for the age group 0-74
ASR have been computed for the age group 0-99+
Saving _problems/test-Rcan-122.R
Population with less than 18 age group:
registry_label year nb_age_group
<fctr> <int> <num>
Brazil, Goiania 1988 17
Brazil, Goiania 1989 17
Brazil, Goiania 1990 17
Brazil, Goiania 1991 17
Brazil, Goiania 1992 17
--- --- ---
USA, Georgia, Atlanta: Black 2003 17
USA, Georgia, Atlanta: Black 2004 17
USA, Georgia, Atlanta: Black 2005 17
USA, Georgia, Atlanta: Black 2006 17
USA, Georgia, Atlanta: Black 2007 17
ASR have been computed for the age group 0-99+
Saving _problems/test-Rcan-149.R
[ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Rcan.R:9:3'): Test csu_group_cases: 1 ──────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_group_cases(...) at test-Rcan.R:9:3
2. └─Rcan:::core.csu_group_cases(...)
3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:29:3'): Test csu_merge_cases_pop: 1 ─────────────────────
Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_group_cases(...) at test-Rcan.R:29:3
2. └─Rcan:::core.csu_group_cases(...)
3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:120:3'): Test trend: 1 ──────────────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(CSU_smooth, loess(CSU_T ~ CSU_Y, span = smoothing)$fitted), by = CSU_BY)`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_time_trend(...) at test-Rcan.R:120:3
2. └─Rcan:::core.csu_time_trend(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:147:3'): Test eapc: 1 ───────────────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(id_group, .GRP), by = group_by)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_eapc(...) at test-Rcan.R:147:3
2. └─Rcan:::core.csu_eapc(...)
3. ├─dt_data[, `:=`(id_group, .GRP), by = group_by]
4. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.92
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
>
> library(testthat)
> test_check("Rcan")
Loading required package: Rcan
Type example(Rcan) to see demo of the function.
Saving _problems/test-Rcan-13.R
Saving _problems/test-Rcan-34.R
Population with less than 18 age group:
registry_label nb_age_group
<fctr> <num>
India, Chennai (Madras) 16
South Australia 17
ASR have been computed for the age group 0-99+
Cumulative risk have been computed for the age group 0-74
ASR have been computed for the age group 0-99+
Saving _problems/test-Rcan-122.R
Population with less than 18 age group:
registry_label year nb_age_group
<fctr> <int> <num>
Brazil, Goiania 1988 17
Brazil, Goiania 1989 17
Brazil, Goiania 1990 17
Brazil, Goiania 1991 17
Brazil, Goiania 1992 17
--- --- ---
USA, Georgia, Atlanta: Black 2003 17
USA, Georgia, Atlanta: Black 2004 17
USA, Georgia, Atlanta: Black 2005 17
USA, Georgia, Atlanta: Black 2006 17
USA, Georgia, Atlanta: Black 2007 17
ASR have been computed for the age group 0-99+
Saving _problems/test-Rcan-149.R
[ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Rcan.R:9:3'): Test csu_group_cases: 1 ──────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_group_cases(...) at test-Rcan.R:9:3
2. └─Rcan:::core.csu_group_cases(...)
3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:29:3'): Test csu_merge_cases_pop: 1 ─────────────────────
Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_group_cases(...) at test-Rcan.R:29:3
2. └─Rcan:::core.csu_group_cases(...)
3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:120:3'): Test trend: 1 ──────────────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(CSU_smooth, loess(CSU_T ~ CSU_Y, span = smoothing)$fitted), by = CSU_BY)`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_time_trend(...) at test-Rcan.R:120:3
2. └─Rcan:::core.csu_time_trend(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-Rcan.R:147:3'): Test eapc: 1 ───────────────────────────────────
Error in ``[.data.table`(dt_data, , `:=`(id_group, .GRP), by = group_by)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─Rcan::csu_eapc(...) at test-Rcan.R:147:3
2. └─Rcan:::core.csu_eapc(...)
3. ├─dt_data[, `:=`(id_group, .GRP), by = group_by]
4. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc