Last updated on 2025-05-31 13:50:09 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| zetadiv | 3 | 3 | 7 |
Current CRAN status: ERROR: 3, NOTE: 3, OK: 7
Version: 1.2.1
Check: Rd files
Result: NOTE
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
| ^
Flavors: r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
glm.cons.Rd: glm2
glm.fit.cons.Rd: glm.fit2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in 'zetadiv-Ex.R' failed
The error most likely occurred in:
> ### Name: Zeta.order.ex
> ### Title: Expectation of zeta diversity for a specific number of
> ### assemblages or sites
> ### Aliases: Zeta.order.ex
>
> ### ** Examples
>
>
> utils::data(bird.spec.coarse)
> data.spec.bird <- bird.spec.coarse[,3:193]
>
> zeta.bird <- Zeta.order.ex(data.spec.bird, order = 3)
> zeta.bird
$zeta.order
[1] 3
$combinations
[1] 302621
$zeta.val
[1] 57.61204
$zeta.val.sd
[1] 13.10351
>
> ##########
> s
Error: object 's' not found
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘zetadiv-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Zeta.order.ex
> ### Title: Expectation of zeta diversity for a specific number of
> ### assemblages or sites
> ### Aliases: Zeta.order.ex
>
> ### ** Examples
>
>
> utils::data(bird.spec.coarse)
> data.spec.bird <- bird.spec.coarse[,3:193]
>
> zeta.bird <- Zeta.order.ex(data.spec.bird, order = 3)
> zeta.bird
$zeta.order
[1] 3
$combinations
[1] 302621
$zeta.val
[1] 57.61204
$zeta.val.sd
[1] 13.10351
>
> ##########
> s
Error: object 's' not found
Execution halted
Flavor: r-patched-linux-x86_64