Last updated on 2025-12-07 07:50:34 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| RcppParallel | 3 | 10 | ||
| renv | 1 | 12 | ||
| rstudioapi | 1 | 1 | 11 |
Current CRAN status: NOTE: 3, OK: 10
Version: 5.1.11-1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.5
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'covr', 'devtools', 'knitr', 'pak', 'rmarkdown', 'yaml'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [170s/90s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> library(testthat)
> library(renv, warn.conflicts = FALSE)
>
> if (!renv:::renv_tests_supported()) {
+ message("* renv does not support running tests on this platform.")
+ if (!interactive()) quit(status = 0L)
+ }
>
> if (Sys.info()[["sysname"]] == "Linux") {
+ tools <- asNamespace("tools")
+ if (is.function(tools$R_user_dir)) {
+ cachedir <- tools$R_user_dir("renv", "cache")
+ dir.create(cachedir, recursive = TRUE, showWarnings = FALSE)
+ }
+ }
>
> test_check("renv")
Starting 2 test processes.
> test-restore.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-restore.R: The following required packages are not installed:
> test-restore.R: - KernSmooth
> test-restore.R: - MASS
> test-restore.R: - Matrix
> test-restore.R: - boot
> test-restore.R: - class
> test-restore.R: - cluster
> test-restore.R: - codetools
> test-restore.R: - foreign
> test-restore.R: - lattice
> test-restore.R: - mgcv
> test-restore.R: - nlme
> test-restore.R: - nnet
> test-restore.R: - rpart
> test-restore.R: - spatial
> test-restore.R: - survival
> test-restore.R: Packages must first be installed before renv can snapshot them.
> test-restore.R: Use `renv::dependencies()` to see where this package is used in your project.
> test-restore.R:
> test-restore.R: Removing package from '/tmp/RtmpxazaoN/renv-test-18b48d1604cb4e/renv/library/linux-debian-forky/R-4.6-r89107/x86_64-pc-linux-gnu'
> test-restore.R: (as 'lib' is unspecified)
> test-install.R: renv was unable to query available packages from the following repositories:
> test-install.R: - # file:///tmp/Rtmpx53esN/renv-repos-18b4a67b05201e/missing/src/contrib --------
> test-install.R: error downloading 'file:///tmp/Rtmpx53esN/renv-repos-18b4a67b05201e/missing/src/contrib/PACKAGES.rds' [error code 37]
> test-install.R: error downloading 'file:///tmp/Rtmpx53esN/renv-repos-18b4a67b05201e/missing/src/contrib/PACKAGES.gz' [error code 37]
> test-install.R: error downloading 'file:///tmp/Rtmpx53esN/renv-repos-18b4a67b05201e/missing/src/contrib/PACKAGES' [error code 37]
> test-install.R:
> test-install.R:
> test-snapshot.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-snapshot.R: The following required packages are not installed:
> test-snapshot.R: - KernSmooth
> test-snapshot.R: - MASS
> test-snapshot.R: - Matrix
> test-snapshot.R: - boot
> test-snapshot.R: - class
> test-snapshot.R: - cluster
> test-snapshot.R: - codetools
> test-snapshot.R: - foreign
> test-snapshot.R: - lattice
> test-snapshot.R: - mgcv
> test-snapshot.R: - nlme
> test-snapshot.R: - nnet
> test-snapshot.R: - rpart
> test-snapshot.R: - spatial
> test-snapshot.R: - survival
> test-snapshot.R: Packages must first be installed before renv can snapshot them.
> test-snapshot.R: Use `renv::dependencies()` to see where this package is used in your project.
> test-snapshot.R:
> test-install.R: Installing package into '/tmp/Rtmpx53esN/renv-library-18b4a63a0ade6a'
> test-install.R: (as 'lib' is unspecified)
> test-install.R: * installing *source* package ‘bread’ ...
> test-install.R: ** this is package ‘bread’ version ‘1.0.0’
> test-install.R: ** using staged installation
> test-install.R: No man pages found in package ‘bread’
> test-install.R: ** help
> test-install.R: *** installing help indices
> test-install.R: ** building package indices
> test-install.R: ** testing if installed package can be loaded from temporary location
> test-install.R: ** testing if installed package can be loaded from final location
> test-install.R: ** testing if installed package keeps a record of temporary installation path
> test-install.R: * DONE (bread)
> test-install.R: Removing package from '/tmp/Rtmpx53esN/renv-library-18b4a63a0ade6a'
> test-install.R: (as 'lib' is unspecified)
> test-snapshot.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-snapshot.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-snapshot.R: WARNING: One or more problems were discovered while enumerating dependencies.
> test-snapshot.R:
> test-snapshot.R: # /tmp/RtmpxazaoN/renv-test-18b48d750daa33/parse-error.R ---------------------
> test-snapshot.R: Error: /tmp/RtmpxazaoN/renv-test-18b48d750daa33/parse-error.R:1:7: unexpected symbol
> test-snapshot.R: 1: parse error
> test-snapshot.R: ^
> test-snapshot.R:
> test-snapshot.R: Please see `?renv::dependencies` for more information.
> test-snapshot.R:
> test-actions.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-actions.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-available-packages.R: renv was unable to query available packages from the following repositories:
> test-available-packages.R: - # file:///tmp/RtmpxazaoN/renv-repos-18b48d18ef9183/missing/src/contrib --------
> test-available-packages.R: error downloading 'file:///tmp/RtmpxazaoN/renv-repos-18b48d18ef9183/missing/src/contrib/PACKAGES.rds' [error code 37]
> test-available-packages.R: error downloading 'file:///tmp/RtmpxazaoN/renv-repos-18b48d18ef9183/missing/src/contrib/PACKAGES.gz' [error code 37]
> test-available-packages.R: error downloading 'file:///tmp/RtmpxazaoN/renv-repos-18b48d18ef9183/missing/src/contrib/PACKAGES' [error code 37]
> test-available-packages.R:
> test-available-packages.R:
> test-dependencies.R: WARNING: One or more problems were discovered while enumerating dependencies.
> test-dependencies.R:
> test-dependencies.R: # /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/renv.Rcheck/tests/testthat/resources/chunk-errors.Rmd --------
> test-dependencies.R: Error: chunk starting on line 19 is not closed
> test-dependencies.R:
> test-dependencies.R: Error: <text>:12:6: unexpected symbol
> test-dependencies.R: 11:
> test-dependencies.R: 12: this chunk
> test-dependencies.R: ^
> test-dependencies.R:
> test-dependencies.R: Error: <text>:16:5: unexpected symbol
> test-dependencies.R: 15:
> test-dependencies.R: 16: and so
> test-dependencies.R: ^
> test-dependencies.R:
> test-dependencies.R: Please see `?renv::dependencies` for more information.
> test-dependencies.R:
Saving _problems/test-dependencies-270.R
Saving _problems/test-dependencies-299.R
Saving _problems/test-dependencies-309.R
Saving _problems/test-dependencies-320.R
Saving _problems/test-dependencies-335.R
Saving _problems/test-dependencies-336.R
Saving _problems/test-dependencies-341.R
Saving _problems/test-dependencies-347.R
> test-infrastructure.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-infrastructure.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-init.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-init.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-init.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-init.R: WARNING: One or more problems were discovered while enumerating dependencies.
> test-init.R:
> test-init.R: # /tmp/Rtmpx53esN/renv-test-18b4a639a7cdb9/analysis.R ------------------------
> test-init.R: Error: /tmp/Rtmpx53esN/renv-test-18b4a639a7cdb9/analysis.R:1:4: unexpected symbol
> test-init.R: 1: oh no
> test-init.R: ^
> test-init.R:
> test-init.R: Please see `?renv::dependencies` for more information.
> test-init.R:
> test-init.R: The following required packages are not installed:
> test-init.R: - KernSmooth
> test-init.R: - MASS
> test-init.R: - Matrix
> test-init.R: - boot
> test-init.R: - class
> test-init.R: - cluster
> test-init.R: - codetools
> test-init.R: - foreign
> test-init.R: - lattice
> test-init.R: - mgcv
> test-init.R: - nlme
> test-init.R: - nnet
> test-init.R: - rpart
> test-init.R: - spatial
> test-init.R: - survival
> test-init.R: Packages must first be installed before renv can snapshot them.
> test-init.R: Use `renv::dependencies()` to see where this package is used in your project.
> test-init.R:
Saving _problems/test-rmd-107.R
> test-run.R: [1] TRUE
> test-settings.R: - The project is out-of-sync -- use `renv::status()` for details.
> test-status.R: - The project is out-of-sync -- use `renv::status()` for details.
[ FAIL 9 | WARN 0 | SKIP 235 | PASS 752 ]
══ Skipped tests (235) ═════════════════════════════════════════════════════════
• On CRAN (223): 'test-bioconductor.R:22:3', 'test-bioconductor.R:71:3',
'test-bioconductor.R:101:3', 'test-bioconductor.R:131:5',
'test-bioconductor.R:150:3', 'test-bioconductor.R:186:3',
'test-python.R:15:3', 'test-python.R:29:3', 'test-python.R:45:3',
'test-python.R:63:3', 'test-python.R:93:3', 'test-python.R:208:3',
'test-python.R:236:3', 'test-restore.R:16:3', 'test-restore.R:33:3',
'test-restore.R:268:3', 'test-restore.R:296:3', 'test-install.R:65:3',
'test-install.R:112:3', 'test-install.R:157:3', 'test-install.R:201:3',
'test-install.R:259:3', 'test-install.R:266:3', 'test-install.R:276:3',
'test-install.R:294:3', 'test-install.R:320:3', 'test-install.R:336:3',
'test-install.R:347:3', 'test-install.R:404:3', 'test-install.R:427:3',
'test-install.R:448:3', 'test-install.R:471:3', 'test-install.R:495:3',
'test-install.R:507:1', 'test-install.R:521:3', 'test-install.R:548:3',
'test-install.R:577:3', 'test-install.R:613:3', 'test-install.R:646:3',
'test-install.R:692:3', 'test-install.R:774:3', 'test-snapshot.R:16:1',
'test-snapshot.R:27:1', 'test-snapshot.R:111:3', 'test-snapshot.R:160:1',
'test-snapshot.R:321:3', 'test-snapshot.R:352:1', 'test-snapshot.R:364:3',
'test-snapshot.R:381:1', 'test-snapshot.R:396:3', 'test-snapshot.R:432:1',
'test-snapshot.R:442:1', 'test-snapshot.R:475:1', 'test-snapshot.R:517:1',
'test-snapshot.R:527:1', 'test-snapshot.R:553:1', 'test-snapshot.R:640:1',
'test-snapshot.R:651:1', 'test-snapshot.R:665:3', 'test-snapshot.R:676:3',
'test-snapshot.R:688:3', 'test-remotes.R:33:3', 'test-remotes.R:207:3',
'test-acls.R:4:3', 'test-activate.R:4:3', 'test-activate.R:29:3',
'test-activate.R:48:1', 'test-archive.R:51:3', 'test-autoload.R:3:3',
'test-retrieve.R:4:3', 'test-retrieve.R:20:3', 'test-retrieve.R:36:3',
'test-retrieve.R:52:3', 'test-retrieve.R:70:3', 'test-retrieve.R:85:3',
'test-retrieve.R:104:3', 'test-retrieve.R:120:3', 'test-retrieve.R:138:3',
'test-retrieve.R:153:3', 'test-retrieve.R:161:3', 'test-retrieve.R:282:3',
'test-retrieve.R:299:3', 'test-retrieve.R:315:3', 'test-retrieve.R:354:3',
'test-retrieve.R:367:3', 'test-available-packages.R:3:3',
'test-available-packages.R:23:3', 'test-available-packages.R:44:3',
'test-available-packages.R:60:3', 'test-available-packages.R:78:3',
'test-available-packages.R:90:3', 'test-available-packages.R:111:3',
'test-available-packages.R:132:3', 'test-available-packages.R:158:3',
'test-cache.R:3:3', 'test-cache.R:108:3', 'test-cache.R:127:3',
'test-cache.R:155:3', 'test-cache.R:186:3', 'test-caution.R:2:1',
'test-caution.R:15:3', 'test-cellar.R:3:3', 'test-bootstrap.R:4:3',
'test-bootstrap.R:18:3', 'test-bootstrap.R:32:3', 'test-bootstrap.R:125:1',
'test-bootstrap.R:161:1', 'test-bootstrap.R:186:1', 'test-bootstrap.R:231:1',
'test-bootstrap.R:270:1', 'test-checkout.R:20:3', 'test-config.R:91:3',
'test-dots.R:2:1', 'test-download.R:3:3', 'test-download.R:60:3',
'test-download.R:116:3', 'test-download.R:143:3', 'test-download.R:158:3',
'test-files.R:204:3', 'test-history.R:4:3', 'test-dependencies.R:88:1',
'test-dependencies.R:102:1', 'test-dependencies.R:368:3',
'test-dependencies.R:467:1', 'test-id.R:3:3', 'test-infrastructure.R:4:3',
'test-job.R:3:3', 'test-json.R:54:3', 'test-json.R:64:3', 'test-load.R:25:3',
'test-load.R:34:1', 'test-load.R:47:1', 'test-lock.R:4:3',
'test-lock.R:19:3', 'test-lock.R:35:3', 'test-lock.R:60:3',
'test-lock.R:88:3', 'test-lock.R:110:3', 'test-lock.R:134:3',
'test-lock.R:166:3', 'test-lockfile-read.R:1:1',
'test-lockfile-validate.R:2:3', 'test-lockfile-validate.R:81:3',
'test-lockfile-validate.R:142:3', 'test-lockfile-validate.R:197:3',
'test-lockfile-validate.R:251:3', 'test-lockfile-validate.R:283:3',
'test-lockfile-validate.R:315:3', 'test-lockfile.R:44:3',
'test-lockfile.R:54:3', 'test-migrate.R:21:3', 'test-migrate.R:61:3',
'test-modify.R:4:3', 'test-modify.R:16:3', 'test-mran.R:3:3',
'test-init.R:3:3', 'test-init.R:12:3', 'test-init.R:65:3',
'test-init.R:134:3', 'test-init.R:164:3', 'test-init.R:190:3',
'test-init.R:223:3', 'test-init.R:233:3', 'test-init.R:243:3',
'test-init.R:277:3', 'test-pak.R:4:3', 'test-pak.R:25:3', 'test-ppm.R:3:3',
'test-ppm.R:15:3', 'test-ppm.R:27:3', 'test-ppm.R:39:3', 'test-ppm.R:51:3',
'test-ppm.R:78:3', 'test-ppm.R:111:3', 'test-ppm.R:143:3',
'test-ppm.R:175:3', 'test-ppm.R:208:3', 'test-ppm.R:235:3',
'test-ppm.R:260:3', 'test-ppm.R:284:3', 'test-ppm.R:311:3',
'test-ppm.R:336:3', 'test-ppm.R:363:3', 'test-ppm.R:387:3',
'test-preflight.R:23:3', 'test-profiles.R:3:3', 'test-profiles.R:34:3',
'test-r.R:3:3', 'test-r.R:48:3', 'test-profile.R:3:3', 'test-profile.R:34:3',
'test-reload.R:4:3', 'test-repair.R:4:3', 'test-repair.R:27:3',
'test-repair.R:55:3', 'test-repos.R:59:3', 'test-sandbox.R:116:3',
'test-socket.R:4:3', 'test-sysreqs.R:4:3', 'test-sysreqs.R:25:3',
'test-sysreqs.R:48:3', 'test-sysreqs.R:62:3', 'test-system.R:3:3',
'test-update.R:4:3', 'test-update.R:20:3', 'test-update.R:52:3',
'test-update.R:94:3', 'test-update.R:109:3', 'test-update.R:146:3',
'test-upgrade.R:4:3', 'test-use.R:4:3', 'test-use.R:30:3',
'test-utils.R:159:3', 'test-vendor.R:8:3', 'test-watchdog.R:4:3',
'test-watchdog.R:39:3', 'test-status.R:1:1', 'test-status.R:15:1',
'test-status.R:24:1', 'test-status.R:37:1', 'test-status.R:50:1',
'test-status.R:61:1', 'test-status.R:78:1'
• Running tests locally (2): 'test-python.R:137:3', 'test-python.R:180:3'
• empty test (3): 'test-dependencies.R:211:1', 'test-dependencies.R:662:1',
'test-json.R:140:1'
• failing test; mtime sometimes differs? (1): 'test-files.R:130:3'
• pak doesn't like file:// repositories? (1): 'test-snapshot.R:416:3'
• renv_platform_macos() is not TRUE (1): 'test-retrieve.R:238:3'
• renv_platform_windows() is not TRUE (1): 'test-install.R:227:3'
• renv_platform_windows() || empty(.Library.site) is TRUE (1):
'test-sandbox.R:60:3'
• {usethis} is not installed (1): 'test-install.R:369:3'
• {yaml} is not installed (1): 'test-dependencies.R:175:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dependencies.R:270:3'): multiple output formats are handled ──
Expected `"bookdown" %in% deps$Package` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-dependencies.R:299:3'): eval=<expr> is treated as truthy ─────
Expected `"a" %in% deps$Package` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
── Failure ('test-dependencies.R:309:3'): bslib dependencies are discovered ────
Expected `"bslib" %in% deps$Package` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-dependencies.R:320:3'): we handle shiny_prerendered documents ──
Expected `"shiny" %in% deps$Package` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-dependencies.R:335:3'): we parse package references from arbitrary yaml fields ──
Expected `"bookdown" %in% deps$Package` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-dependencies.R:336:3'): we parse package references from arbitrary yaml fields ──
Expected `"rticles" %in% deps$Package` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-dependencies.R:341:3'): dependencies in parameterized documents are discovered ──
Expected `all(c("shiny", "A") %in% deps$Package)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-dependencies.R:347:3'): we ignore chunks with '#| eval: false' ──
Expected `"a" %in% deps$Package` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
── Error ('test-rmd.R:107:5'): we can parse chunk YAML options ─────────────────
Error in `order(names(lhs))`: argument 1 is not a vector
Backtrace:
▆
1. └─renv:::expect_same_elements(output, case$expected) at test-rmd.R:107:5
2. └─base::order(names(lhs))
[ FAIL 9 | WARN 0 | SKIP 235 | PASS 752 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.5
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, WARN: 1, OK: 11
Version: 0.17.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'covr'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.17.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.17.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘dialogs.Rmd’ using rmarkdown
--- finished re-building ‘dialogs.Rmd’
--- re-building ‘document-manipulation.Rmd’ using rmarkdown
--- finished re-building ‘document-manipulation.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’
--- re-building ‘projects.Rmd’ using rmarkdown
--- finished re-building ‘projects.Rmd’
--- re-building ‘r-session.Rmd’ using rmarkdown
--- finished re-building ‘r-session.Rmd’
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted
SUMMARY: processing the following files failed:
‘terminal.Rmd’ ‘visual-mode.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64