Last updated on 2025-12-07 07:50:33 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| bayesplot | 1 | 7 | 5 | |
| loo | 1 | 12 | ||
| rstantools | 1 | 12 | ||
| shinystan | 1 | 3 | 9 |
Current CRAN status: ERROR: 1, NOTE: 7, OK: 5
Version: 1.14.0
Check: Rd files
Result: NOTE
checkRd: (-1) bayesplot-package.Rd:28: height/width attributes should be in pixels
checkRd: (-1) bayesplot-package.Rd:29: height/width attributes should be in pixels
checkRd: (-1) bayesplot-package.Rd:30: height/width attributes should be in pixels
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.14.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'rstanarm', 'shinystan'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.14.0
Check: examples
Result: ERROR
Running examples in ‘bayesplot-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MCMC-scatterplots
> ### Title: Scatterplots of MCMC draws
> ### Aliases: MCMC-scatterplots mcmc_scatter mcmc_hex mcmc_pairs
> ### scatter_style_np pairs_style_np pairs_condition
>
> ### ** Examples
>
> library("ggplot2")
>
> # some parameter draws to use for demonstration
> x <- example_mcmc_draws(params = 6)
> dimnames(x)
$Iteration
NULL
$Chain
[1] "chain:1" "chain:2" "chain:3" "chain:4"
$Parameter
[1] "alpha" "sigma" "beta[1]" "beta[2]" "beta[3]" "beta[4]"
>
> # scatterplot of alpha vs log(sigma)
> color_scheme_set("teal")
> (p <- mcmc_scatter(x, pars = c("alpha", "sigma"),
+ transform = list(sigma = "log")))
> p +
+ labs(
+ title = "Insert your own headline-grabbing title",
+ subtitle = "with a provocative subtitle",
+ caption = "and a controversial caption",
+ x = expression(alpha),
+ y = expression(log(sigma))
+ )
>
> # add ellipse
> p + stat_ellipse(level = 0.9, color = "gray20", size = 1)
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
Error in `stat_ellipse()`:
! Problem while computing stat.
ℹ Error occurred in the 2nd layer.
Caused by error in `setup_params()`:
! The package "MASS" is required for calculating ellipses with `type =
"t"`.
Backtrace:
▆
1. ├─base (local) `<fn>`(x)
2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
3. │ ├─ggplot2::ggplot_build(x)
4. │ └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x)
5. │ └─ggplot2:::by_layer(...)
6. │ ├─rlang::try_fetch(...)
7. │ │ ├─base::tryCatch(...)
8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
13. │ └─l$compute_statistic(d, layout)
14. │ └─ggplot2 (local) compute_statistic(..., self = self)
15. │ └─self$stat$setup_params(data, self$stat_params)
16. │ └─ggplot2 (local) setup_params(...)
17. │ └─rlang::check_installed("MASS", "for calculating ellipses with `type = \"t\"`.")
18. │ └─base::stop(cnd)
19. └─rlang (local) `<fn>`(`<rlb_r___>`)
20. └─handlers[[1L]](cnd)
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.14.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.14.0
Check: installed package size
Result: NOTE
installed size is 6.6Mb
sub-directories of 1Mb or more:
R 1.9Mb
doc 4.0Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 1, OK: 12
Version: 2.8.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'rstanarm'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.8.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 2.5.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'usethis', 'knitr', 'roxygen2', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rstantools)
This is rstantools version 2.5.0
>
> foo <- function(x) {"test function"}
>
> if (identical(Sys.getenv("TRAVIS"), "true")) {
+ test_check("rstantools", filter = "methods")
+ } else {
+ test_check("rstantools")
+ }
Saving _problems/test-rstan_config-43.R
Saving _problems/test-rstan_create_package-66.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 42 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-rstan_config.R:40:1'): (code run outside of `test_that()`) ─────
Error: Please install package 'usethis' to use function 'rstan_create_package'.
Backtrace:
▆
1. └─rstantools::rstan_create_package(...) at test-rstan_config.R:40:1
── Error ('test-rstan_create_package.R:63:5'): (code run outside of `test_that()`) ──
Error: Please install package 'usethis' to use function 'rstan_create_package'.
Backtrace:
▆
1. └─rstantools::rstan_create_package(...) at test-rstan_create_package.R:63:5
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 42 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.5.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 2.6.0
Check: package dependencies
Result: ERROR
Packages required but not available:
'colourpicker', 'DT', 'dygraphs', 'threejs'
Packages suggested but not available for checking:
'cmdstanr', 'knitr', 'rmarkdown', 'rsconnect', 'rstanarm'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.6.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘cmdstanr’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64