CRAN Package Check Results for Maintainer ‘Matthew B. Jones <jones at nceas.ucsb.edu>’

Last updated on 2025-12-07 07:50:33 CET.

Package ERROR WARN NOTE OK
codyn 1 12
datapack 1 12
redland 1 4 6 2

Package codyn

Current CRAN status: WARN: 1, NOTE: 12

Version: 2.0.5
Check: Rd files
Result: NOTE checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:58-61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:62-65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:66-69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:70-74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:75-78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:79-84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:85-88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:44-46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:67-70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:71-74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:75-76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) codyn-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_diversity.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_diversity.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_diversity.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_diversity.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_diversity.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_diversity.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_stability.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_stability.Rd:26-27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_structure.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_structure.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_structure.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confint.cyclic_shift.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confint.cyclic_shift.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confint.cyclic_shift.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_change.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mean_rank_shift.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mean_rank_shift.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mean_rank_shift.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:49-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:50-52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:53-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rank_shift.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rank_shift.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rank_shift.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change_interval.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change_interval.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change_interval.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) synchrony.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) synchrony.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) synchrony.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) synchrony.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.0.5
Check: package dependencies
Result: WARN Cannot process vignettes Packages suggested but not available for checking: 'knitr', 'devtools', 'rmarkdown' VignetteBuilder package required for checking but not installed: ‘knitr’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.5
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-devel-linux-x86_64-debian-gcc

Package datapack

Current CRAN status: ERROR: 1, OK: 12

Version: 1.4.2
Check: package dependencies
Result: ERROR Package required but not available: ‘redland’ Packages suggested but not available for checking: 'knitr', 'rmarkdown' VignetteBuilder package required for checking but not installed: ‘knitr’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Package redland

Current CRAN status: ERROR: 1, WARN: 4, NOTE: 6, OK: 2

Version: 1.0.17-18
Check: compiled code
Result: WARN File ‘redland/libs/redland.so’: Found non-API call to R: ‘SET_S4_OBJECT’ This entry point may be removed soon. Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.17-18
Check: package dependencies
Result: ERROR Package required but not available: ‘roxygen2’ Packages suggested but not available for checking: 'spelling', 'knitr', 'rmarkdown' VignetteBuilder package required for checking but not installed: ‘knitr’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.17-18
Check: compiled code
Result: WARN File 'redland/libs/x64/redland.dll': Found non-API call to R: 'SET_S4_OBJECT' This entry point may be removed soon. Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points. Flavor: r-devel-windows-x86_64

Version: 1.0.17-18
Check: compiled code
Result: NOTE File ‘redland/libs/redland.so’: Found non-API call to R: ‘SET_S4_OBJECT’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64

Version: 1.0.17-18
Check: compiled code
Result: NOTE File 'redland/libs/x64/redland.dll': Found non-API call to R: 'SET_S4_OBJECT' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points. Flavor: r-release-windows-x86_64

Version: 1.0.17-18
Check: installed package size
Result: NOTE installed size is 13.3Mb sub-directories of 1Mb or more: libs 12.3Mb Flavor: r-oldrel-windows-x86_64