Last updated on 2025-07-01 13:50:26 CEST.
| Package | ERROR | OK |
|---|---|---|
| ridigbio | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘BadCoordinateID.Rmd’ using rmarkdown
--- finished re-building ‘BadCoordinateID.Rmd’
--- re-building ‘BasicUsage.Rmd’ using rmarkdown
--- finished re-building ‘BasicUsage.Rmd’
--- re-building ‘Fields.Rmd’ using rmarkdown
--- finished re-building ‘Fields.Rmd’
--- re-building ‘FindTissue.Rmd’ using rmarkdown
[WARNING] Div at FindTissue.knit.md line 173 column 1 unclosed at FindTissue.knit.md line 8381 column 1, closing implicitly.
--- finished re-building ‘FindTissue.Rmd’
--- re-building ‘IDDataFlags.Rmd’ using rmarkdown
Quitting from IDDataFlags.Rmd:57-90 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `as.environment()`:
! using 'as.environment(NULL)' is defunct
---
Backtrace:
▆
1. ├─... %>% ...
2. ├─dplyr::select(...)
3. ├─dplyr::rename(...)
4. └─ridigbio::idig_search_records(...)
5. └─ridigbio::idig_search(...)
6. ├─plyr::rbind.fill(dat, fmt_search_txt_to_df(search_results, fields))
7. └─ridigbio:::fmt_search_txt_to_df(search_results, fields)
8. └─base::exists("items", httr::content(txt))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'IDDataFlags.Rmd' failed with diagnostics:
using 'as.environment(NULL)' is defunct
--- failed re-building ‘IDDataFlags.Rmd’
--- re-building ‘MediaAPIDemo.Rmd’ using rmarkdown
--- finished re-building ‘MediaAPIDemo.Rmd’
--- re-building ‘ModifiedDataID.Rmd’ using rmarkdown
--- finished re-building ‘ModifiedDataID.Rmd’
--- re-building ‘RecordAPIDemo.Rmd’ using rmarkdown
[WARNING] Div at RecordAPIDemo.knit.md line 200 column 1 unclosed at RecordAPIDemo.knit.md line 12004 column 1, closing implicitly.
--- finished re-building ‘RecordAPIDemo.Rmd’
--- re-building ‘ridigbio.Rmd’ using rmarkdown
--- finished re-building ‘ridigbio.Rmd’
SUMMARY: processing the following file failed:
‘IDDataFlags.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc