Last updated on 2026-11-09 01:52:19 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5.2 | 12.24 | 269.41 | 281.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.5.2 | 8.23 | 133.07 | 141.30 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.5.2 | 9.00 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.5.2 | 8.00 | 171.71 | 179.71 | OK | |
| r-devel-windows-x86_64 | 1.5.2 | 17.00 | 259.00 | 276.00 | OK | |
| r-patched-linux-x86_64 | 1.5.2 | OK | ||||
| r-release-linux-x86_64 | 1.5.2 | 12.25 | 253.26 | 265.51 | OK | |
| r-release-macos-arm64 | 1.5.2 | 3.00 | 66.00 | 69.00 | OK | |
| r-release-macos-x86_64 | 1.5.2 | 8.00 | 262.00 | 270.00 | OK | |
| r-release-windows-x86_64 | 1.5.2 | 18.00 | 246.00 | 264.00 | OK | |
| r-oldrel-macos-arm64 | 1.5.2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.5.2 | 5.00 | 103.00 | 108.00 | OK | |
| r-oldrel-windows-x86_64 | 1.5.2 | 24.00 | 329.00 | 353.00 | OK |
Version: 1.5.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [52s/63s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dplyr, warn.conflicts = FALSE)
>
> # run the tests
> test_check("isoorbi")
Loading required package: isoorbi
Saving _problems/test-plotting-180.R
Saving _problems/test-read-raw-91.R
Saving _problems/test-read-raw-91.R
Saving _problems/test-read-raw-111.R
Saving _problems/test-read-raw-111.R
[ FAIL 5 | WARN 20 | SKIP 52 | PASS 457 ]
══ Skipped tests (52) ══════════════════════════════════════════════════════════
• On CRAN (52): 'test-aggregation.R:9:3', 'test-aggregation.R:9:3',
'test-aggregation.R:59:3', 'test-aggregation.R:59:3',
'test-aggregation.R:158:3', 'test-aggregation.R:158:3',
'test-aggregation.R:103:1', 'test-blocks.R:534:3', 'test-blocks.R:534:3',
'test-blocks.R:668:3', 'test-blocks.R:668:3', 'test-blocks.R:734:1',
'test-conditions-general.R:25:1', 'test-conditions-general.R:71:3',
'test-conditions-general.R:71:3', 'test-conditions-general.R:134:3',
'test-conditions-general.R:134:3', 'test-conditions-general.R:181:3',
'test-conditions-general.R:181:3', 'test-conditions-general.R:267:3',
'test-conditions-general.R:267:3', 'test-conditions-general.R:302:3',
'test-conditions-general.R:302:3', 'test-helpers-general.R:74:3',
'test-helpers-general.R:74:3', 'test-mapping.R:61:3', 'test-mapping.R:61:3',
'test-mapping.R:122:3', 'test-mapping.R:122:3', 'test-options-general.R:1:1',
'test-options-general.R:31:1', 'test-options-package.R:23:3',
'test-options-package.R:23:3', 'test-plotting.R:50:1',
'test-plotting.R:70:1', 'test-plotting.R:100:1', 'test-plotting.R:147:1',
'test-processing.R:65:3', 'test-processing.R:65:3',
'test-processing.R:104:3', 'test-processing.R:104:3',
'test-processing.R:165:3', 'test-processing.R:165:3',
'test-processing.R:266:3', 'test-processing.R:266:3',
'test-processing.R:198:1', 'test-ratios.R:364:3', 'test-ratios.R:364:3',
'test-ratios.R:345:1', 'test-read-isox.R:32:3', 'test-read-isox.R:32:3',
'test-shotnoise.R:32:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plotting.R:173:3'): orbi_plot_spectra() ────────────────────────
Error in `orbi_check_isoraw()`: cannot proceed, required isoorbi raw file reader (version 0.2.2) is missing or does not work
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-plotting.R:173:3
2. │ └─base::withCallingHandlers(...)
3. ├─isoorbi::orbi_aggregate_raw(...)
4. │ └─isoorbi:::aggregate_files(...)
5. │ └─isoorbi:::check_tibble(files_data, files_req_cols)
6. │ ├─isoorbi:::check_arg(...)
7. │ └─base::is.data.frame(df)
8. └─isoorbi::orbi_read_raw(...)
9. └─isoorbi::orbi_check_isoraw()
10. └─cli::cli_abort("cannot proceed, required isoorbi raw file reader (version {numeric_version(min_version)}) is missing or does not work")
11. └─rlang::abort(...)
── Error ('test-read-raw.R:86:5'): orbi_read_raw() / orbi_read_raw() [plain] ───
Error in `orbi_check_isoraw()`: cannot proceed, required isoorbi raw file reader (version 0.2.2) is missing or does not work
Backtrace:
▆
1. └─isoorbi::orbi_read_raw(...)
2. └─isoorbi::orbi_check_isoraw()
3. └─cli::cli_abort("cannot proceed, required isoorbi raw file reader (version {numeric_version(min_version)}) is missing or does not work")
4. └─rlang::abort(...)
── Error ('test-read-raw.R:86:5'): orbi_read_raw() / orbi_read_raw() [fancy] ───
Error in `orbi_check_isoraw()`: <1b>[1m<1b>[22mcannot proceed, required isoorbi raw file reader (version 0.2.2) is missing or does not work
Backtrace:
▆
1. └─isoorbi::orbi_read_raw(...)
2. └─isoorbi::orbi_check_isoraw()
3. └─cli::cli_abort("cannot proceed, required isoorbi raw file reader (version {numeric_version(min_version)}) is missing or does not work")
4. └─rlang::abort(...)
── Error ('test-read-raw.R:106:5'): orbi_read_raw() / orbi_read_raw() step2 [plain] ──
Error in `orbi_check_isoraw()`: cannot proceed, required isoorbi raw file reader (version 0.2.2) is missing or does not work
Backtrace:
▆
1. └─isoorbi::orbi_read_raw(...)
2. └─isoorbi::orbi_check_isoraw()
3. └─cli::cli_abort("cannot proceed, required isoorbi raw file reader (version {numeric_version(min_version)}) is missing or does not work")
4. └─rlang::abort(...)
── Error ('test-read-raw.R:106:5'): orbi_read_raw() / orbi_read_raw() step2 [fancy] ──
Error in `orbi_check_isoraw()`: <1b>[1m<1b>[22mcannot proceed, required isoorbi raw file reader (version 0.2.2) is missing or does not work
Backtrace:
▆
1. └─isoorbi::orbi_read_raw(...)
2. └─isoorbi::orbi_check_isoraw()
3. └─cli::cli_abort("cannot proceed, required isoorbi raw file reader (version {numeric_version(min_version)}) is missing or does not work")
4. └─rlang::abort(...)
[ FAIL 5 | WARN 20 | SKIP 52 | PASS 457 ]
Deleting unused snapshots: 'plotting/spectra-1-scan.svg',
'plotting/spectra-2-scans.svg',
'plotting/spectra-all-but-without-unknown-peaks.svg',
'plotting/spectra-base-peak-spectrum-only.svg',
'plotting/spectra-defaults-off.svg', 'plotting/spectra-m-1-and-m-2-only.svg',
and 'plotting/spectra-single-spectrum-only.svg'
Error:
! Test failures.
Warning messages:
1: In for (i in seq_len(n)) { :
closing unused connection 4 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_10scans.raw.cache.zip:nitrate_test_10scans.raw.cache/cache_info.parquet)
2: In for (i in seq_len(n)) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_10scans.raw.cache.zip:nitrate_test_10scans.raw.cache/cache_info.parquet)
3: In for (t in seq_along(app$themes)) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_1scan.raw.cache.zip:nitrate_test_1scan.raw.cache/cache_info.parquet)
4: In for (k in seq_along(quosures)) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_10scans.raw.cache.zip:nitrate_test_10scans.raw.cache/cache_info.parquet)
5: In for (msg in record) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_1scan.raw.cache.zip:nitrate_test_1scan.raw.cache/cache_info.parquet)
6: In for (i in seq_len(nrow(theme))) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_10scans.raw.cache.zip:nitrate_test_10scans.raw.cache/cache_info.parquet)
7: In for (t in seq_along(app$themes)) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_1scan.raw.cache.zip:nitrate_test_1scan.raw.cache/cache_info.parquet)
8: In for (i in seq_len(n)) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_10scans.raw.cache.zip:nitrate_test_10scans.raw.cache/cache_info.parquet)
9: In .Internal(lapply(X, FUN)) :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_1scan.raw.cache.zip:nitrate_test_1scan.raw.cache/cache_info.parquet)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.5.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘dual_inlet.Rmd’ using rmarkdown
Quitting from dual_inlet.Rmd:31-51 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<1b>[1m<1b>[34m<error/rlang_error><1b>[39m<1b>[22m
<1b>[1m<1b>[33mError<1b>[39m in <1b>[1m<1b>[94m`orbi_check_isoraw()`<1b>[39m<1b>[1m:<1b>[22m
<1b>[1m<1b>[22m<1b>[33m!<1b>[39m cannot proceed, required isoorbi raw file reader (version 0.2.2) is
missing or does not work
---
<1b>[1mBacktrace:<1b>[22m
<1b>[90m <1b>[39m▆
<1b>[90m 1. <1b>[39m├─<1b>[1misoorbi<1b>[22m::orbi_aggregate_raw(...)
<1b>[90m 2. <1b>[39m│ <1b>[38;5;246m└─isoorbi:::aggregate_files(...)<1b>[39m
<1b>[90m 3. <1b>[39m│ <1b>[38;5;246m└─isoorbi:::check_tibble(files_data, files_req_cols)<1b>[39m
<1b>[90m 4. <1b>[39m│ <1b>[38;5;246m├─isoorbi:::check_arg(...)<1b>[39m
<1b>[90m 5. <1b>[39m│ <1b>[38;5;246m└─<1b>[1mbase<1b>[22m::is.data.frame(df)<1b>[39m
<1b>[90m 6. <1b>[39m└─<1b>[1misoorbi<1b>[22m::orbi_read_raw(raw_file, include_spectra = c(10, 100))
<1b>[90m 7. <1b>[39m └─<1b>[1m<1b>[94misoorbi::orbi_check_isoraw(<1b>[39m<1b>[22m<1b>[1m<1b>[94m)<1b>[39m<1b>[22m
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'dual_inlet.Rmd' failed with diagnostics:
<1b>[1m<1b>[22mcannot proceed, required isoorbi raw file reader (version 0.2.2) is
missing or does not work
--- failed re-building ‘dual_inlet.Rmd’
--- re-building ‘flow_injection.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘flow_injection.Rmd’
--- re-building ‘functionality_guide.Rmd’ using rmarkdown
Warning in for (i in seq_along(cenv$extra)) { :
closing unused connection 5 (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/isoorbi/extdata/nitrate_test_1scan.raw.cache.zip:nitrate_test_1scan.raw.cache/cache_info.parquet)
Quitting from functionality_guide.Rmd:29-43 [read files]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<1b>[1m<1b>[34m<error/rlang_error><1b>[39m<1b>[22m
<1b>[1m<1b>[33mError<1b>[39m in <1b>[1m<1b>[94m`orbi_check_isoraw()`<1b>[39m<1b>[1m:<1b>[22m
<1b>[1m<1b>[22m<1b>[33m!<1b>[39m cannot proceed, required isoorbi raw file reader (version 0.2.2) is
missing or does not work
---
<1b>[1mBacktrace:<1b>[22m
<1b>[90m <1b>[39m▆
<1b>[90m 1. <1b>[39m├─<1b>[1mbase<1b>[22m::suppressMessages(...)
<1b>[90m 2. <1b>[39m│ <1b>[38;5;246m└─base::withCallingHandlers(...)<1b>[39m
<1b>[90m 3. <1b>[39m└─<1b>[1misoorbi<1b>[22m::orbi_read_raw(...)
<1b>[90m 4. <1b>[39m └─<1b>[1m<1b>[94misoorbi::orbi_check_isoraw(<1b>[39m<1b>[22m<1b>[1m<1b>[94m)<1b>[39m<1b>[22m
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'functionality_guide.Rmd' failed with diagnostics:
<1b>[1m<1b>[22mcannot proceed, required isoorbi raw file reader (version 0.2.2) is
missing or does not work
--- failed re-building ‘functionality_guide.Rmd’
SUMMARY: processing the following files failed:
‘dual_inlet.Rmd’ ‘functionality_guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc